Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4348

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4346 and EX28DRAFT_4347 are separated by 57 nucleotidesEX28DRAFT_4347 and EX28DRAFT_4348 are separated by 188 nucleotidesEX28DRAFT_4348 and EX28DRAFT_4349 are separated by 72 nucleotidesEX28DRAFT_4349 and EX28DRAFT_4350 are separated by 111 nucleotides EX28DRAFT_4346: EX28DRAFT_4346 - RNA, at 8,896 to 9,150 _4346 EX28DRAFT_4347: EX28DRAFT_4347 - Uncharacterized protein conserved in bacteria, at 9,208 to 9,723 _4347 EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285 _4348 EX28DRAFT_4349: EX28DRAFT_4349 - hypothetical protein, at 11,358 to 11,468 _4349 EX28DRAFT_4350: EX28DRAFT_4350 - nitrogen regulation protein NR(I), at 11,580 to 12,992 _4350 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 8.928 kb on - strand, within EX28DRAFT_4346at 9.000 kb on + strand, within EX28DRAFT_4346at 9.000 kb on + strand, within EX28DRAFT_4346at 9.034 kb on - strand, within EX28DRAFT_4346at 9.174 kb on + strandat 9.175 kb on - strandat 9.177 kb on - strandat 9.194 kb on - strandat 9.194 kb on - strandat 9.194 kb on - strandat 9.194 kb on - strandat 9.650 kb on - strand, within EX28DRAFT_4347at 9.693 kb on + strandat 9.693 kb on + strandat 9.693 kb on + strandat 9.694 kb on - strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.757 kb on - strandat 9.758 kb on + strandat 9.759 kb on - strandat 9.759 kb on - strandat 9.771 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.774 kb on - strandat 9.779 kb on - strandat 9.803 kb on + strandat 9.882 kb on - strandat 9.882 kb on - strandat 9.947 kb on - strandat 9.963 kb on + strandat 10.078 kb on - strand, within EX28DRAFT_4348at 10.387 kb on + strand, within EX28DRAFT_4348at 10.387 kb on + strand, within EX28DRAFT_4348at 11.216 kb on + strandat 11.284 kb on - strandat 11.311 kb on + strandat 11.311 kb on + strandat 11.345 kb on + strandat 11.364 kb on - strandat 11.448 kb on - strand, within EX28DRAFT_4349at 11.448 kb on - strand, within EX28DRAFT_4349at 11.500 kb on + strandat 11.500 kb on + strandat 11.501 kb on - strandat 11.501 kb on - strandat 11.501 kb on - strandat 11.501 kb on - strandat 11.520 kb on + strandat 11.575 kb on + strandat 12.042 kb on - strand, within EX28DRAFT_4350

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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8,928 - EX28DRAFT_4346 0.13 -0.0
9,000 + EX28DRAFT_4346 0.41 +0.5
9,000 + EX28DRAFT_4346 0.41 -0.2
9,034 - EX28DRAFT_4346 0.54 -0.2
9,174 + +0.7
9,175 - -0.2
9,177 - -0.3
9,194 - +0.3
9,194 - -0.1
9,194 - +0.1
9,194 - +0.3
9,650 - EX28DRAFT_4347 0.86 -0.3
9,693 + -0.5
9,693 + -1.1
9,693 + -0.5
9,694 - +0.8
9,756 + +0.6
9,756 + +0.4
9,757 - -0.1
9,758 + -0.6
9,759 - +0.5
9,759 - +0.6
9,771 + +0.2
9,773 + -0.3
9,773 + -0.1
9,773 + -0.5
9,773 + +0.1
9,773 + +0.3
9,773 + -0.1
9,774 - -0.2
9,779 - +0.6
9,803 + -0.1
9,882 - +0.4
9,882 - -0.2
9,947 - -0.3
9,963 + -0.3
10,078 - EX28DRAFT_4348 0.12 -0.1
10,387 + EX28DRAFT_4348 0.35 -0.6
10,387 + EX28DRAFT_4348 0.35 -2.2
11,216 + -0.8
11,284 - +0.2
11,311 + -0.3
11,311 + -0.1
11,345 + +0.1
11,364 - -0.5
11,448 - EX28DRAFT_4349 0.81 +0.0
11,448 - EX28DRAFT_4349 0.81 -0.4
11,500 + +0.3
11,500 + +0.8
11,501 - +0.3
11,501 - +0.0
11,501 - -1.1
11,501 - +0.0
11,520 + +0.3
11,575 + +0.1
12,042 - EX28DRAFT_4350 0.33 -0.5

Or see this region's nucleotide sequence