Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4346 and EX28DRAFT_4347 are separated by 57 nucleotides EX28DRAFT_4347 and EX28DRAFT_4348 are separated by 188 nucleotides EX28DRAFT_4348 and EX28DRAFT_4349 are separated by 72 nucleotides EX28DRAFT_4349 and EX28DRAFT_4350 are separated by 111 nucleotides
EX28DRAFT_4346: EX28DRAFT_4346 - RNA, at 8,896 to 9,150
_4346
EX28DRAFT_4347: EX28DRAFT_4347 - Uncharacterized protein conserved in bacteria, at 9,208 to 9,723
_4347
EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285
_4348
EX28DRAFT_4349: EX28DRAFT_4349 - hypothetical protein, at 11,358 to 11,468
_4349
EX28DRAFT_4350: EX28DRAFT_4350 - nitrogen regulation protein NR(I), at 11,580 to 12,992
_4350
Position (kb)
9
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1 at 8.928 kb on - strand, within EX28DRAFT_4346 at 9.000 kb on + strand, within EX28DRAFT_4346 at 9.000 kb on + strand, within EX28DRAFT_4346 at 9.034 kb on - strand, within EX28DRAFT_4346 at 9.174 kb on + strand at 9.175 kb on - strand at 9.177 kb on - strand at 9.194 kb on - strand at 9.194 kb on - strand at 9.194 kb on - strand at 9.194 kb on - strand at 9.650 kb on - strand, within EX28DRAFT_4347 at 9.693 kb on + strand at 9.693 kb on + strand at 9.693 kb on + strand at 9.694 kb on - strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.757 kb on - strand at 9.758 kb on + strand at 9.759 kb on - strand at 9.759 kb on - strand at 9.771 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.774 kb on - strand at 9.779 kb on - strand at 9.803 kb on + strand at 9.882 kb on - strand at 9.882 kb on - strand at 9.947 kb on - strand at 9.963 kb on + strand at 10.078 kb on - strand, within EX28DRAFT_4348 at 10.387 kb on + strand, within EX28DRAFT_4348 at 10.387 kb on + strand, within EX28DRAFT_4348 at 11.216 kb on + strand at 11.284 kb on - strand at 11.311 kb on + strand at 11.311 kb on + strand at 11.345 kb on + strand at 11.364 kb on - strand at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.500 kb on + strand at 11.500 kb on + strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.520 kb on + strand at 11.575 kb on + strand at 12.042 kb on - strand, within EX28DRAFT_4350
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 8,928 - EX28DRAFT_4346 0.13 -0.0 9,000 + EX28DRAFT_4346 0.41 +0.5 9,000 + EX28DRAFT_4346 0.41 -0.2 9,034 - EX28DRAFT_4346 0.54 -0.2 9,174 + +0.7 9,175 - -0.2 9,177 - -0.3 9,194 - +0.3 9,194 - -0.1 9,194 - +0.1 9,194 - +0.3 9,650 - EX28DRAFT_4347 0.86 -0.3 9,693 + -0.5 9,693 + -1.1 9,693 + -0.5 9,694 - +0.8 9,756 + +0.6 9,756 + +0.4 9,757 - -0.1 9,758 + -0.6 9,759 - +0.5 9,759 - +0.6 9,771 + +0.2 9,773 + -0.3 9,773 + -0.1 9,773 + -0.5 9,773 + +0.1 9,773 + +0.3 9,773 + -0.1 9,774 - -0.2 9,779 - +0.6 9,803 + -0.1 9,882 - +0.4 9,882 - -0.2 9,947 - -0.3 9,963 + -0.3 10,078 - EX28DRAFT_4348 0.12 -0.1 10,387 + EX28DRAFT_4348 0.35 -0.6 10,387 + EX28DRAFT_4348 0.35 -2.2 11,216 + -0.8 11,284 - +0.2 11,311 + -0.3 11,311 + -0.1 11,345 + +0.1 11,364 - -0.5 11,448 - EX28DRAFT_4349 0.81 +0.0 11,448 - EX28DRAFT_4349 0.81 -0.4 11,500 + +0.3 11,500 + +0.8 11,501 - +0.3 11,501 - +0.0 11,501 - -1.1 11,501 - +0.0 11,520 + +0.3 11,575 + +0.1 12,042 - EX28DRAFT_4350 0.33 -0.5
Or see this region's nucleotide sequence