Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotides EX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotides EX28DRAFT_4153 and EX28DRAFT_4154 are separated by 92 nucleotides
EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044
_4151
EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852
_4152
EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998
_4153
EX28DRAFT_4154: EX28DRAFT_4154 - Uncharacterized protein conserved in bacteria, at 135,091 to 136,407
_4154
Position (kb)
133
134
135 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 133.005 kb on - strand at 133.015 kb on - strand at 133.015 kb on - strand at 133.018 kb on - strand at 133.111 kb on + strand at 133.112 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.145 kb on - strand at 133.151 kb on + strand at 133.151 kb on + strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.159 kb on + strand at 133.181 kb on - strand at 133.237 kb on + strand at 133.238 kb on - strand at 133.244 kb on + strand at 133.244 kb on + strand at 133.315 kb on + strand at 133.318 kb on + strand at 133.349 kb on - strand at 133.488 kb on + strand, within EX28DRAFT_4152 at 133.634 kb on + strand, within EX28DRAFT_4152 at 133.828 kb on + strand at 133.862 kb on + strand at 133.864 kb on + strand at 133.864 kb on + strand at 133.865 kb on - strand at 133.865 kb on - strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.867 kb on - strand at 133.891 kb on + strand at 133.927 kb on + strand at 133.943 kb on - strand at 134.479 kb on + strand, within EX28DRAFT_4153 at 134.518 kb on + strand, within EX28DRAFT_4153 at 134.519 kb on - strand, within EX28DRAFT_4153 at 134.650 kb on + strand, within EX28DRAFT_4153 at 134.852 kb on + strand, within EX28DRAFT_4153 at 135.068 kb on + strand at 135.379 kb on - strand, within EX28DRAFT_4154 at 135.671 kb on + strand, within EX28DRAFT_4154 at 135.867 kb on + strand, within EX28DRAFT_4154 at 135.867 kb on + strand, within EX28DRAFT_4154
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 133,005 - +0.2 133,015 - -0.4 133,015 - +0.6 133,018 - -0.1 133,111 + -0.4 133,112 - +0.1 133,117 - +0.7 133,117 - -0.0 133,117 - +0.2 133,117 - -1.5 133,117 - -0.9 133,117 - -3.7 133,145 - +0.8 133,151 + -0.5 133,151 + +0.5 133,152 - +0.5 133,152 - +1.0 133,152 - +0.5 133,159 + -0.2 133,181 - -0.6 133,237 + +0.1 133,238 - -0.5 133,244 + -0.0 133,244 + -0.9 133,315 + -0.5 133,318 + -0.8 133,349 - -0.5 133,488 + EX28DRAFT_4152 0.30 -0.2 133,634 + EX28DRAFT_4152 0.58 +1.0 133,828 + -1.5 133,862 + -1.5 133,864 + -2.9 133,864 + -0.3 133,865 - +0.1 133,865 - -0.1 133,866 + -0.1 133,866 + -0.3 133,866 + +0.5 133,867 - +0.5 133,891 + -0.9 133,927 + -1.5 133,943 - -0.5 134,479 + EX28DRAFT_4153 0.52 -2.0 134,518 + EX28DRAFT_4153 0.56 -2.3 134,519 - EX28DRAFT_4153 0.56 -1.5 134,650 + EX28DRAFT_4153 0.68 -1.8 134,852 + EX28DRAFT_4153 0.87 -0.5 135,068 + +1.4 135,379 - EX28DRAFT_4154 0.22 -1.3 135,671 + EX28DRAFT_4154 0.44 +0.3 135,867 + EX28DRAFT_4154 0.59 +1.2 135,867 + EX28DRAFT_4154 0.59 +0.4
Or see this region's nucleotide sequence