Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3571 and EX28DRAFT_3572 are separated by 95 nucleotides EX28DRAFT_3572 and EX28DRAFT_3573 are separated by 95 nucleotides
EX28DRAFT_3571: EX28DRAFT_3571 - PTS system, lactose/cellobiose family IIC component, at 232,638 to 233,984
_3571
EX28DRAFT_3572: EX28DRAFT_3572 - siderophore-iron reductase FhuF, at 234,080 to 234,868
_3572
EX28DRAFT_3573: EX28DRAFT_3573 - diguanylate cyclase (GGDEF) domain, at 234,964 to 236,028
_3573
Position (kb) 234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 233.151 kb on - strand, within EX28DRAFT_3571 at 233.300 kb on + strand, within EX28DRAFT_3571 at 233.301 kb on - strand, within EX28DRAFT_3571 at 233.301 kb on - strand, within EX28DRAFT_3571 at 233.301 kb on - strand, within EX28DRAFT_3571 at 233.572 kb on - strand, within EX28DRAFT_3571 at 233.636 kb on + strand, within EX28DRAFT_3571 at 233.693 kb on + strand, within EX28DRAFT_3571 at 233.851 kb on + strand at 233.852 kb on - strand at 233.886 kb on + strand at 233.886 kb on + strand at 233.887 kb on - strand at 233.887 kb on - strand at 233.887 kb on - strand at 233.907 kb on + strand at 233.983 kb on - strand at 233.986 kb on + strand at 234.082 kb on - strand at 234.082 kb on - strand at 234.304 kb on - strand, within EX28DRAFT_3572 at 234.323 kb on - strand, within EX28DRAFT_3572 at 234.362 kb on + strand, within EX28DRAFT_3572 at 234.363 kb on - strand, within EX28DRAFT_3572 at 234.534 kb on - strand, within EX28DRAFT_3572 at 234.573 kb on + strand, within EX28DRAFT_3572 at 234.573 kb on + strand, within EX28DRAFT_3572 at 234.574 kb on - strand, within EX28DRAFT_3572 at 234.640 kb on + strand, within EX28DRAFT_3572 at 234.641 kb on - strand, within EX28DRAFT_3572 at 234.641 kb on - strand, within EX28DRAFT_3572 at 234.869 kb on - strand at 234.871 kb on + strand at 234.872 kb on - strand at 234.873 kb on + strand at 234.873 kb on + strand at 234.874 kb on - strand at 234.874 kb on - strand at 234.885 kb on + strand at 234.886 kb on - strand at 234.912 kb on + strand at 234.913 kb on - strand at 235.000 kb on - strand at 235.000 kb on - strand at 235.152 kb on - strand, within EX28DRAFT_3573 at 235.317 kb on + strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.434 kb on + strand, within EX28DRAFT_3573 at 235.436 kb on + strand, within EX28DRAFT_3573 at 235.437 kb on - strand, within EX28DRAFT_3573 at 235.586 kb on + strand, within EX28DRAFT_3573 at 235.604 kb on - strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.819 kb on - strand, within EX28DRAFT_3573
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 233,151 - EX28DRAFT_3571 0.38 -0.0 233,300 + EX28DRAFT_3571 0.49 -0.1 233,301 - EX28DRAFT_3571 0.49 -0.8 233,301 - EX28DRAFT_3571 0.49 -0.5 233,301 - EX28DRAFT_3571 0.49 -0.2 233,572 - EX28DRAFT_3571 0.69 +0.3 233,636 + EX28DRAFT_3571 0.74 +0.8 233,693 + EX28DRAFT_3571 0.78 +0.1 233,851 + -1.7 233,852 - -0.2 233,886 + -0.2 233,886 + +1.5 233,887 - +0.1 233,887 - +0.3 233,887 - +0.0 233,907 + +0.0 233,983 - +0.5 233,986 + -0.1 234,082 - -0.3 234,082 - +0.1 234,304 - EX28DRAFT_3572 0.28 -0.7 234,323 - EX28DRAFT_3572 0.31 -0.4 234,362 + EX28DRAFT_3572 0.36 -0.2 234,363 - EX28DRAFT_3572 0.36 -1.0 234,534 - EX28DRAFT_3572 0.58 -0.8 234,573 + EX28DRAFT_3572 0.62 -0.4 234,573 + EX28DRAFT_3572 0.62 -0.4 234,574 - EX28DRAFT_3572 0.63 -0.9 234,640 + EX28DRAFT_3572 0.71 -0.9 234,641 - EX28DRAFT_3572 0.71 +0.1 234,641 - EX28DRAFT_3572 0.71 -0.6 234,869 - -0.1 234,871 + -0.5 234,872 - -0.1 234,873 + -1.1 234,873 + -0.2 234,874 - -2.5 234,874 - +1.3 234,885 + -0.7 234,886 - +0.3 234,912 + +0.4 234,913 - -0.8 235,000 - -0.0 235,000 - +0.3 235,152 - EX28DRAFT_3573 0.18 +0.0 235,317 + EX28DRAFT_3573 0.33 +0.1 235,318 - EX28DRAFT_3573 0.33 +0.2 235,318 - EX28DRAFT_3573 0.33 +0.7 235,337 + EX28DRAFT_3573 0.35 -0.0 235,337 + EX28DRAFT_3573 0.35 -0.9 235,338 - EX28DRAFT_3573 0.35 -0.4 235,338 - EX28DRAFT_3573 0.35 +0.3 235,434 + EX28DRAFT_3573 0.44 -0.3 235,436 + EX28DRAFT_3573 0.44 +0.3 235,437 - EX28DRAFT_3573 0.44 +0.2 235,586 + EX28DRAFT_3573 0.58 -2.9 235,604 - EX28DRAFT_3573 0.60 -0.1 235,605 + EX28DRAFT_3573 0.60 -0.3 235,605 + EX28DRAFT_3573 0.60 -1.3 235,660 - EX28DRAFT_3573 0.65 +0.4 235,660 - EX28DRAFT_3573 0.65 -1.3 235,730 + EX28DRAFT_3573 0.72 -0.4 235,730 + EX28DRAFT_3573 0.72 -0.2 235,818 + EX28DRAFT_3573 0.80 +0.4 235,818 + EX28DRAFT_3573 0.80 -0.2 235,819 - EX28DRAFT_3573 0.80 -0.3
Or see this region's nucleotide sequence