Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3377

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3376 and EX28DRAFT_3377 are separated by 66 nucleotidesEX28DRAFT_3377 and EX28DRAFT_3378 are separated by 85 nucleotides EX28DRAFT_3376: EX28DRAFT_3376 - ribonuclease R, at 43,907 to 46,351 _3376 EX28DRAFT_3377: EX28DRAFT_3377 - rRNA methylase, putative, group 3, at 46,418 to 47,152 _3377 EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512 _3378 Position (kb) 46 47 48Strain fitness (log2 ratio) -1 0 1at 45.481 kb on + strand, within EX28DRAFT_3376at 45.605 kb on - strand, within EX28DRAFT_3376at 46.397 kb on + strandat 46.402 kb on - strandat 46.402 kb on - strandat 46.434 kb on - strandat 46.516 kb on + strand, within EX28DRAFT_3377at 46.957 kb on + strand, within EX28DRAFT_3377at 46.957 kb on + strand, within EX28DRAFT_3377at 47.321 kb on - strandat 47.323 kb on + strandat 47.323 kb on + strandat 47.413 kb on + strand, within EX28DRAFT_3378at 47.413 kb on + strand, within EX28DRAFT_3378at 47.518 kb on - strand, within EX28DRAFT_3378at 47.771 kb on - strand, within EX28DRAFT_3378at 47.862 kb on - strand, within EX28DRAFT_3378

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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45,481 + EX28DRAFT_3376 0.64 -0.1
45,605 - EX28DRAFT_3376 0.69 +0.3
46,397 + -0.6
46,402 - +0.4
46,402 - +0.3
46,434 - -0.7
46,516 + EX28DRAFT_3377 0.13 -1.2
46,957 + EX28DRAFT_3377 0.73 -0.1
46,957 + EX28DRAFT_3377 0.73 -1.2
47,321 - -0.2
47,323 + -0.5
47,323 + -0.5
47,413 + EX28DRAFT_3378 0.14 +0.6
47,413 + EX28DRAFT_3378 0.14 -0.3
47,518 - EX28DRAFT_3378 0.22 -0.2
47,771 - EX28DRAFT_3378 0.42 -0.2
47,862 - EX28DRAFT_3378 0.49 +0.1

Or see this region's nucleotide sequence