Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2669

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2668 and EX28DRAFT_2669 are separated by 108 nucleotidesEX28DRAFT_2669 and EX28DRAFT_2670 are separated by 51 nucleotides EX28DRAFT_2668: EX28DRAFT_2668 - Acyl-CoA dehydrogenases, at 2,704,843 to 2,707,287 _2668 EX28DRAFT_2669: EX28DRAFT_2669 - Predicted amidohydrolase, at 2,707,396 to 2,708,166 _2669 EX28DRAFT_2670: EX28DRAFT_2670 - Gamma-glutamyltransferase, at 2,708,218 to 2,709,819 _2670 Position (kb) 2707 2708 2709Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2706.397 kb on + strand, within EX28DRAFT_2668at 2706.397 kb on + strand, within EX28DRAFT_2668at 2706.568 kb on + strand, within EX28DRAFT_2668at 2706.569 kb on - strand, within EX28DRAFT_2668at 2706.660 kb on + strand, within EX28DRAFT_2668at 2707.072 kb on - strandat 2707.144 kb on - strandat 2707.149 kb on + strandat 2707.301 kb on + strandat 2707.301 kb on + strandat 2707.348 kb on + strandat 2707.349 kb on - strandat 2707.359 kb on - strandat 2707.359 kb on - strandat 2707.359 kb on - strandat 2707.416 kb on + strandat 2707.753 kb on + strand, within EX28DRAFT_2669at 2707.753 kb on + strand, within EX28DRAFT_2669at 2707.876 kb on + strand, within EX28DRAFT_2669at 2707.876 kb on + strand, within EX28DRAFT_2669at 2707.876 kb on + strand, within EX28DRAFT_2669at 2707.877 kb on - strand, within EX28DRAFT_2669at 2707.928 kb on + strand, within EX28DRAFT_2669at 2707.954 kb on + strand, within EX28DRAFT_2669at 2707.954 kb on + strand, within EX28DRAFT_2669at 2707.955 kb on - strand, within EX28DRAFT_2669at 2708.002 kb on + strand, within EX28DRAFT_2669at 2708.212 kb on - strandat 2708.315 kb on + strandat 2708.377 kb on - strandat 2708.475 kb on + strand, within EX28DRAFT_2670at 2708.476 kb on - strand, within EX28DRAFT_2670at 2708.628 kb on + strand, within EX28DRAFT_2670at 2708.628 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.765 kb on + strand, within EX28DRAFT_2670at 2708.814 kb on + strand, within EX28DRAFT_2670at 2708.850 kb on - strand, within EX28DRAFT_2670at 2708.886 kb on + strand, within EX28DRAFT_2670at 2708.906 kb on + strand, within EX28DRAFT_2670at 2708.992 kb on - strand, within EX28DRAFT_2670at 2709.098 kb on - strand, within EX28DRAFT_2670

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,706,397 + EX28DRAFT_2668 0.64 +0.0
2,706,397 + EX28DRAFT_2668 0.64 -0.2
2,706,568 + EX28DRAFT_2668 0.71 +0.5
2,706,569 - EX28DRAFT_2668 0.71 -0.2
2,706,660 + EX28DRAFT_2668 0.74 +0.8
2,707,072 - -0.2
2,707,144 - -0.0
2,707,149 + +0.3
2,707,301 + +0.5
2,707,301 + -0.9
2,707,348 + -0.8
2,707,349 - -0.2
2,707,359 - +0.7
2,707,359 - +0.1
2,707,359 - +1.8
2,707,416 + -0.6
2,707,753 + EX28DRAFT_2669 0.46 +0.6
2,707,753 + EX28DRAFT_2669 0.46 -1.2
2,707,876 + EX28DRAFT_2669 0.62 -0.5
2,707,876 + EX28DRAFT_2669 0.62 -0.2
2,707,876 + EX28DRAFT_2669 0.62 +0.0
2,707,877 - EX28DRAFT_2669 0.62 +0.5
2,707,928 + EX28DRAFT_2669 0.69 +0.4
2,707,954 + EX28DRAFT_2669 0.72 +0.1
2,707,954 + EX28DRAFT_2669 0.72 +0.1
2,707,955 - EX28DRAFT_2669 0.73 -0.1
2,708,002 + EX28DRAFT_2669 0.79 +0.4
2,708,212 - +0.4
2,708,315 + +0.9
2,708,377 - -1.8
2,708,475 + EX28DRAFT_2670 0.16 +0.8
2,708,476 - EX28DRAFT_2670 0.16 +0.1
2,708,628 + EX28DRAFT_2670 0.26 -0.7
2,708,628 + EX28DRAFT_2670 0.26 -1.4
2,708,711 + EX28DRAFT_2670 0.31 -2.9
2,708,711 + EX28DRAFT_2670 0.31 +0.3
2,708,711 + EX28DRAFT_2670 0.31 -0.2
2,708,711 + EX28DRAFT_2670 0.31 -0.0
2,708,711 + EX28DRAFT_2670 0.31 +0.2
2,708,711 + EX28DRAFT_2670 0.31 +0.3
2,708,712 - EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 +0.4
2,708,712 - EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 -0.8
2,708,712 - EX28DRAFT_2670 0.31 -0.4
2,708,712 - EX28DRAFT_2670 0.31 -1.2
2,708,712 - EX28DRAFT_2670 0.31 +1.0
2,708,712 - EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 -1.0
2,708,765 + EX28DRAFT_2670 0.34 -0.0
2,708,814 + EX28DRAFT_2670 0.37 +0.1
2,708,850 - EX28DRAFT_2670 0.39 +0.0
2,708,886 + EX28DRAFT_2670 0.42 +0.0
2,708,906 + EX28DRAFT_2670 0.43 -0.1
2,708,992 - EX28DRAFT_2670 0.48 -0.1
2,709,098 - EX28DRAFT_2670 0.55 -0.4

Or see this region's nucleotide sequence