Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2541

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2540 and EX28DRAFT_2541 overlap by 11 nucleotidesEX28DRAFT_2541 and EX28DRAFT_2542 overlap by 1 nucleotidesEX28DRAFT_2542 and EX28DRAFT_2543 are separated by 11 nucleotides EX28DRAFT_2540: EX28DRAFT_2540 - cytochrome o ubiquinol oxidase, subunit I, at 2,572,596 to 2,574,587 _2540 EX28DRAFT_2541: EX28DRAFT_2541 - cytochrome o ubiquinol oxidase, subunit III, at 2,574,577 to 2,575,191 _2541 EX28DRAFT_2542: EX28DRAFT_2542 - cytochrome o ubiquinol oxidase subunit IV, at 2,575,191 to 2,575,517 _2542 EX28DRAFT_2543: EX28DRAFT_2543 - protoheme IX farnesyltransferase, at 2,575,529 to 2,576,416 _2543 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -2 -1 0 1at 2573.626 kb on + strand, within EX28DRAFT_2540at 2574.030 kb on - strand, within EX28DRAFT_2540at 2574.715 kb on + strand, within EX28DRAFT_2541at 2575.169 kb on + strandat 2575.190 kb on - strandat 2575.323 kb on - strand, within EX28DRAFT_2542at 2575.419 kb on - strand, within EX28DRAFT_2542at 2575.497 kb on + strandat 2575.498 kb on - strandat 2575.515 kb on + strandat 2575.529 kb on - strandat 2575.642 kb on + strand, within EX28DRAFT_2543at 2575.646 kb on + strand, within EX28DRAFT_2543at 2575.647 kb on - strand, within EX28DRAFT_2543at 2575.700 kb on + strand, within EX28DRAFT_2543at 2575.701 kb on - strand, within EX28DRAFT_2543at 2575.883 kb on + strand, within EX28DRAFT_2543at 2575.883 kb on + strand, within EX28DRAFT_2543at 2575.904 kb on + strand, within EX28DRAFT_2543at 2575.904 kb on + strand, within EX28DRAFT_2543at 2575.905 kb on - strand, within EX28DRAFT_2543

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,573,626 + EX28DRAFT_2540 0.52 -2.0
2,574,030 - EX28DRAFT_2540 0.72 -1.3
2,574,715 + EX28DRAFT_2541 0.22 -1.0
2,575,169 + -0.2
2,575,190 - -0.6
2,575,323 - EX28DRAFT_2542 0.40 -0.8
2,575,419 - EX28DRAFT_2542 0.70 +1.2
2,575,497 + -0.8
2,575,498 - +0.4
2,575,515 + -1.8
2,575,529 - -0.9
2,575,642 + EX28DRAFT_2543 0.13 -1.9
2,575,646 + EX28DRAFT_2543 0.13 +0.3
2,575,647 - EX28DRAFT_2543 0.13 -0.9
2,575,700 + EX28DRAFT_2543 0.19 -0.2
2,575,701 - EX28DRAFT_2543 0.19 -1.0
2,575,883 + EX28DRAFT_2543 0.40 -1.6
2,575,883 + EX28DRAFT_2543 0.40 -0.9
2,575,904 + EX28DRAFT_2543 0.42 -1.2
2,575,904 + EX28DRAFT_2543 0.42 -1.4
2,575,905 - EX28DRAFT_2543 0.42 -0.9

Or see this region's nucleotide sequence