Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2532

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2531 and EX28DRAFT_2532 are separated by 69 nucleotidesEX28DRAFT_2532 and EX28DRAFT_2533 are separated by 19 nucleotides EX28DRAFT_2531: EX28DRAFT_2531 - endopeptidase La, at 2,561,980 to 2,564,334 _2531 EX28DRAFT_2532: EX28DRAFT_2532 - RNA, at 2,564,404 to 2,564,497 _2532 EX28DRAFT_2533: EX28DRAFT_2533 - endopeptidase Clp ATP-binding regulatory subunit (clpX), at 2,564,517 to 2,565,791 _2533 Position (kb) 2564 2565Strain fitness (log2 ratio) -3 -2 -1 0 1at 2563.989 kb on - strand, within EX28DRAFT_2531at 2564.035 kb on - strand, within EX28DRAFT_2531at 2564.352 kb on - strandat 2564.401 kb on - strandat 2564.401 kb on - strandat 2564.408 kb on - strandat 2564.408 kb on - strandat 2564.415 kb on - strand, within EX28DRAFT_2532at 2564.415 kb on - strand, within EX28DRAFT_2532at 2564.416 kb on + strand, within EX28DRAFT_2532at 2564.489 kb on - strandat 2565.273 kb on + strand, within EX28DRAFT_2533at 2565.273 kb on + strand, within EX28DRAFT_2533

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,563,989 - EX28DRAFT_2531 0.85 -3.6
2,564,035 - EX28DRAFT_2531 0.87 -0.4
2,564,352 - +1.0
2,564,401 - -2.4
2,564,401 - +1.2
2,564,408 - -0.3
2,564,408 - +0.2
2,564,415 - EX28DRAFT_2532 0.12 -1.1
2,564,415 - EX28DRAFT_2532 0.12 -0.5
2,564,416 + EX28DRAFT_2532 0.13 -1.4
2,564,489 - -0.5
2,565,273 + EX28DRAFT_2533 0.59 -1.0
2,565,273 + EX28DRAFT_2533 0.59 +1.2

Or see this region's nucleotide sequence