Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2485

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2484 and EX28DRAFT_2485 are separated by 110 nucleotidesEX28DRAFT_2485 and EX28DRAFT_2486 overlap by 1 nucleotidesEX28DRAFT_2486 and EX28DRAFT_2487 are separated by 54 nucleotides EX28DRAFT_2484: EX28DRAFT_2484 - Molecular chaperone, HSP90 family, at 2,514,593 to 2,516,467 _2484 EX28DRAFT_2485: EX28DRAFT_2485 - DNA replication and repair protein RecR, at 2,516,578 to 2,517,183 _2485 EX28DRAFT_2486: EX28DRAFT_2486 - DNA-binding protein, YbaB/EbfC family, at 2,517,183 to 2,517,515 _2486 EX28DRAFT_2487: EX28DRAFT_2487 - DNA polymerase III, subunit gamma and tau, at 2,517,570 to 2,519,498 _2487 EX28DRAFT_2488: EX28DRAFT_2488 - RNA, at 2,518,176 to 2,518,240 _2488 Position (kb) 2516 2517 2518Strain fitness (log2 ratio) -2 -1 0 1at 2515.633 kb on - strand, within EX28DRAFT_2484at 2515.647 kb on + strand, within EX28DRAFT_2484at 2515.658 kb on - strand, within EX28DRAFT_2484at 2515.745 kb on - strand, within EX28DRAFT_2484at 2515.787 kb on + strand, within EX28DRAFT_2484at 2515.788 kb on - strand, within EX28DRAFT_2484at 2515.984 kb on - strand, within EX28DRAFT_2484at 2516.086 kb on - strand, within EX28DRAFT_2484at 2516.470 kb on - strandat 2516.494 kb on - strandat 2516.505 kb on - strandat 2516.715 kb on + strand, within EX28DRAFT_2485at 2516.717 kb on + strand, within EX28DRAFT_2485at 2516.717 kb on + strand, within EX28DRAFT_2485at 2516.718 kb on - strand, within EX28DRAFT_2485at 2516.718 kb on - strand, within EX28DRAFT_2485at 2516.906 kb on + strand, within EX28DRAFT_2485at 2516.906 kb on + strand, within EX28DRAFT_2485at 2516.907 kb on - strand, within EX28DRAFT_2485at 2516.907 kb on - strand, within EX28DRAFT_2485at 2517.516 kb on - strandat 2517.516 kb on - strandat 2517.554 kb on + strandat 2517.555 kb on - strandat 2517.555 kb on - strandat 2517.555 kb on - strandat 2517.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,515,633 - EX28DRAFT_2484 0.55 +0.3
2,515,647 + EX28DRAFT_2484 0.56 +0.5
2,515,658 - EX28DRAFT_2484 0.57 -0.1
2,515,745 - EX28DRAFT_2484 0.61 +0.3
2,515,787 + EX28DRAFT_2484 0.64 +0.6
2,515,788 - EX28DRAFT_2484 0.64 -0.2
2,515,984 - EX28DRAFT_2484 0.74 -1.4
2,516,086 - EX28DRAFT_2484 0.80 -0.0
2,516,470 - -0.3
2,516,494 - -1.5
2,516,505 - +0.5
2,516,715 + EX28DRAFT_2485 0.23 -0.9
2,516,717 + EX28DRAFT_2485 0.23 +0.2
2,516,717 + EX28DRAFT_2485 0.23 -0.8
2,516,718 - EX28DRAFT_2485 0.23 -1.8
2,516,718 - EX28DRAFT_2485 0.23 -0.6
2,516,906 + EX28DRAFT_2485 0.54 -0.5
2,516,906 + EX28DRAFT_2485 0.54 -2.6
2,516,907 - EX28DRAFT_2485 0.54 -0.6
2,516,907 - EX28DRAFT_2485 0.54 +0.2
2,517,516 - -1.1
2,517,516 - -1.4
2,517,554 + +0.6
2,517,555 - -0.1
2,517,555 - -0.7
2,517,555 - -1.6
2,517,555 - +0.7

Or see this region's nucleotide sequence