Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2472

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2470 and EX28DRAFT_2471 are separated by 44 nucleotidesEX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotidesEX28DRAFT_2472 and EX28DRAFT_2473 overlap by 4 nucleotidesEX28DRAFT_2473 and EX28DRAFT_2474 are separated by 108 nucleotides EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204 _2470 EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163 _2471 EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612 _2472 EX28DRAFT_2473: EX28DRAFT_2473 - Cu(I)-responsive transcriptional regulator, at 2,501,609 to 2,502,019 _2473 EX28DRAFT_2474: EX28DRAFT_2474 - copper-(or silver)-translocating P-type ATPase, at 2,502,128 to 2,504,626 _2474 Position (kb) 2501 2502Strain fitness (log2 ratio) -2 -1 0 1at 2500.183 kb on + strandat 2500.184 kb on - strandat 2500.188 kb on - strandat 2500.193 kb on + strandat 2500.193 kb on + strandat 2500.194 kb on - strandat 2500.249 kb on - strandat 2500.290 kb on + strandat 2500.543 kb on + strand, within EX28DRAFT_2471at 2500.544 kb on - strand, within EX28DRAFT_2471at 2500.672 kb on - strand, within EX28DRAFT_2471at 2500.672 kb on - strand, within EX28DRAFT_2471at 2500.908 kb on - strand, within EX28DRAFT_2471at 2501.005 kb on + strand, within EX28DRAFT_2471at 2501.006 kb on - strand, within EX28DRAFT_2471at 2501.006 kb on - strand, within EX28DRAFT_2471at 2501.025 kb on + strand, within EX28DRAFT_2471at 2501.462 kb on + strand, within EX28DRAFT_2472at 2501.890 kb on + strand, within EX28DRAFT_2473at 2501.961 kb on + strand, within EX28DRAFT_2473at 2502.014 kb on - strandat 2502.063 kb on + strandat 2502.064 kb on - strandat 2502.097 kb on - strandat 2502.097 kb on - strandat 2502.113 kb on + strandat 2502.114 kb on - strandat 2502.139 kb on + strandat 2502.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,500,183 + +0.3
2,500,184 - -0.9
2,500,188 - -0.2
2,500,193 + -0.2
2,500,193 + -0.3
2,500,194 - +0.0
2,500,249 - +0.6
2,500,290 + -0.4
2,500,543 + EX28DRAFT_2471 0.32 +0.4
2,500,544 - EX28DRAFT_2471 0.32 +0.2
2,500,672 - EX28DRAFT_2471 0.46 +0.0
2,500,672 - EX28DRAFT_2471 0.46 -0.3
2,500,908 - EX28DRAFT_2471 0.72 +0.0
2,501,005 + EX28DRAFT_2471 0.83 -0.1
2,501,006 - EX28DRAFT_2471 0.83 -1.8
2,501,006 - EX28DRAFT_2471 0.83 -0.8
2,501,025 + EX28DRAFT_2471 0.85 +0.0
2,501,462 + EX28DRAFT_2472 0.67 -0.7
2,501,890 + EX28DRAFT_2473 0.68 -0.2
2,501,961 + EX28DRAFT_2473 0.86 +0.0
2,502,014 - +0.4
2,502,063 + +0.5
2,502,064 - +0.9
2,502,097 - -0.7
2,502,097 - -0.1
2,502,113 + +0.2
2,502,114 - +1.2
2,502,139 + +0.2
2,502,321 + -1.8

Or see this region's nucleotide sequence