Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1718 and EX28DRAFT_1719 are separated by 103 nucleotides EX28DRAFT_1719 and EX28DRAFT_1720 are separated by 4 nucleotides
EX28DRAFT_1718: EX28DRAFT_1718 - ABC-type cobalamin transport system, permease component, at 1,733,859 to 1,734,839
_1718
EX28DRAFT_1719: EX28DRAFT_1719 - integration host factor, alpha subunit, at 1,734,943 to 1,735,242
_1719
EX28DRAFT_1720: EX28DRAFT_1720 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 1,735,247 to 1,737,634
_1720
Position (kb)
1734
1735
1736 Strain fitness (log2 ratio)
-1
0
1
2 at 1733.967 kb on - strand, within EX28DRAFT_1718 at 1734.126 kb on - strand, within EX28DRAFT_1718 at 1734.126 kb on - strand, within EX28DRAFT_1718 at 1734.129 kb on + strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.132 kb on + strand, within EX28DRAFT_1718 at 1734.132 kb on + strand, within EX28DRAFT_1718 at 1734.133 kb on - strand, within EX28DRAFT_1718 at 1734.203 kb on + strand, within EX28DRAFT_1718 at 1734.204 kb on - strand, within EX28DRAFT_1718 at 1734.204 kb on - strand, within EX28DRAFT_1718 at 1734.311 kb on - strand, within EX28DRAFT_1718 at 1734.421 kb on - strand, within EX28DRAFT_1718 at 1734.491 kb on + strand, within EX28DRAFT_1718 at 1734.491 kb on + strand, within EX28DRAFT_1718 at 1734.492 kb on - strand, within EX28DRAFT_1718 at 1734.492 kb on - strand, within EX28DRAFT_1718 at 1734.613 kb on - strand, within EX28DRAFT_1718 at 1734.613 kb on - strand, within EX28DRAFT_1718 at 1734.829 kb on + strand at 1734.866 kb on + strand at 1735.033 kb on - strand, within EX28DRAFT_1719 at 1735.162 kb on + strand, within EX28DRAFT_1719 at 1735.233 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,733,967 - EX28DRAFT_1718 0.11 +0.8 1,734,126 - EX28DRAFT_1718 0.27 -0.1 1,734,126 - EX28DRAFT_1718 0.27 +1.1 1,734,129 + EX28DRAFT_1718 0.28 -1.6 1,734,130 - EX28DRAFT_1718 0.28 -0.3 1,734,130 - EX28DRAFT_1718 0.28 -0.1 1,734,130 - EX28DRAFT_1718 0.28 +1.5 1,734,130 - EX28DRAFT_1718 0.28 -0.3 1,734,130 - EX28DRAFT_1718 0.28 -0.3 1,734,130 - EX28DRAFT_1718 0.28 -0.5 1,734,132 + EX28DRAFT_1718 0.28 -0.6 1,734,132 + EX28DRAFT_1718 0.28 -0.0 1,734,133 - EX28DRAFT_1718 0.28 +1.2 1,734,203 + EX28DRAFT_1718 0.35 -0.3 1,734,204 - EX28DRAFT_1718 0.35 +0.6 1,734,204 - EX28DRAFT_1718 0.35 -0.0 1,734,311 - EX28DRAFT_1718 0.46 +0.1 1,734,421 - EX28DRAFT_1718 0.57 +0.0 1,734,491 + EX28DRAFT_1718 0.64 -0.4 1,734,491 + EX28DRAFT_1718 0.64 -0.1 1,734,492 - EX28DRAFT_1718 0.65 -0.3 1,734,492 - EX28DRAFT_1718 0.65 +0.2 1,734,613 - EX28DRAFT_1718 0.77 +1.4 1,734,613 - EX28DRAFT_1718 0.77 +2.3 1,734,829 + -0.0 1,734,866 + +1.8 1,735,033 - EX28DRAFT_1719 0.30 -1.3 1,735,162 + EX28DRAFT_1719 0.73 -0.8 1,735,233 + -0.4
Or see this region's nucleotide sequence