Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1706

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1705 and EX28DRAFT_1706 are separated by 152 nucleotidesEX28DRAFT_1706 and EX28DRAFT_1707 are separated by 19 nucleotides EX28DRAFT_1705: EX28DRAFT_1705 - Uncharacterized protein conserved in bacteria, at 1,721,554 to 1,722,387 _1705 EX28DRAFT_1706: EX28DRAFT_1706 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 1,722,540 to 1,723,586 _1706 EX28DRAFT_1707: EX28DRAFT_1707 - Transcriptional regulator, at 1,723,606 to 1,724,508 _1707 Position (kb) 1722 1723 1724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1721.584 kb on + strandat 1721.732 kb on - strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.765 kb on - strand, within EX28DRAFT_1705at 1721.765 kb on - strand, within EX28DRAFT_1705at 1721.769 kb on + strand, within EX28DRAFT_1705at 1721.770 kb on - strand, within EX28DRAFT_1705at 1721.925 kb on + strand, within EX28DRAFT_1705at 1721.925 kb on + strand, within EX28DRAFT_1705at 1721.957 kb on - strand, within EX28DRAFT_1705at 1722.058 kb on + strand, within EX28DRAFT_1705at 1722.322 kb on + strandat 1722.323 kb on - strandat 1722.323 kb on - strandat 1722.396 kb on + strandat 1722.416 kb on + strandat 1722.545 kb on + strandat 1722.546 kb on - strandat 1722.546 kb on - strandat 1722.751 kb on - strand, within EX28DRAFT_1706at 1722.817 kb on - strand, within EX28DRAFT_1706at 1722.928 kb on + strand, within EX28DRAFT_1706at 1722.929 kb on - strand, within EX28DRAFT_1706at 1723.197 kb on + strand, within EX28DRAFT_1706at 1723.198 kb on - strand, within EX28DRAFT_1706at 1723.232 kb on + strand, within EX28DRAFT_1706at 1723.233 kb on - strand, within EX28DRAFT_1706at 1723.257 kb on + strand, within EX28DRAFT_1706at 1723.257 kb on + strand, within EX28DRAFT_1706at 1723.271 kb on + strand, within EX28DRAFT_1706at 1723.571 kb on - strandat 1723.669 kb on - strandat 1723.680 kb on + strandat 1723.680 kb on + strandat 1723.680 kb on + strandat 1723.680 kb on + strandat 1723.681 kb on - strandat 1723.738 kb on - strand, within EX28DRAFT_1707at 1724.173 kb on + strand, within EX28DRAFT_1707at 1724.173 kb on + strand, within EX28DRAFT_1707at 1724.173 kb on + strand, within EX28DRAFT_1707at 1724.244 kb on + strand, within EX28DRAFT_1707at 1724.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,721,584 + +0.5
1,721,732 - EX28DRAFT_1705 0.21 -0.3
1,721,764 + EX28DRAFT_1705 0.25 -0.7
1,721,764 + EX28DRAFT_1705 0.25 -0.3
1,721,764 + EX28DRAFT_1705 0.25 +0.7
1,721,764 + EX28DRAFT_1705 0.25 -0.3
1,721,764 + EX28DRAFT_1705 0.25 +0.1
1,721,764 + EX28DRAFT_1705 0.25 +2.0
1,721,765 - EX28DRAFT_1705 0.25 +0.6
1,721,765 - EX28DRAFT_1705 0.25 -0.4
1,721,769 + EX28DRAFT_1705 0.26 -0.8
1,721,770 - EX28DRAFT_1705 0.26 -0.9
1,721,925 + EX28DRAFT_1705 0.44 -0.6
1,721,925 + EX28DRAFT_1705 0.44 +0.4
1,721,957 - EX28DRAFT_1705 0.48 -0.4
1,722,058 + EX28DRAFT_1705 0.60 -2.4
1,722,322 + +0.2
1,722,323 - -1.0
1,722,323 - -0.7
1,722,396 + -0.3
1,722,416 + -0.0
1,722,545 + -2.4
1,722,546 - -2.0
1,722,546 - -1.3
1,722,751 - EX28DRAFT_1706 0.20 -3.3
1,722,817 - EX28DRAFT_1706 0.26 -2.0
1,722,928 + EX28DRAFT_1706 0.37 -2.4
1,722,929 - EX28DRAFT_1706 0.37 -2.3
1,723,197 + EX28DRAFT_1706 0.63 -2.3
1,723,198 - EX28DRAFT_1706 0.63 -2.8
1,723,232 + EX28DRAFT_1706 0.66 -0.9
1,723,233 - EX28DRAFT_1706 0.66 -0.6
1,723,257 + EX28DRAFT_1706 0.68 -1.8
1,723,257 + EX28DRAFT_1706 0.68 -2.2
1,723,271 + EX28DRAFT_1706 0.70 -1.7
1,723,571 - -0.9
1,723,669 - -0.0
1,723,680 + -1.5
1,723,680 + -1.4
1,723,680 + -0.6
1,723,680 + -0.2
1,723,681 - +0.6
1,723,738 - EX28DRAFT_1707 0.15 -0.9
1,724,173 + EX28DRAFT_1707 0.63 -0.2
1,724,173 + EX28DRAFT_1707 0.63 +0.2
1,724,173 + EX28DRAFT_1707 0.63 -0.2
1,724,244 + EX28DRAFT_1707 0.71 -0.1
1,724,467 + +0.7

Or see this region's nucleotide sequence