Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1432

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1429 and EX28DRAFT_1430 are separated by 0 nucleotidesEX28DRAFT_1430 and EX28DRAFT_1431 are separated by 7 nucleotidesEX28DRAFT_1431 and EX28DRAFT_1432 overlap by 4 nucleotidesEX28DRAFT_1432 and EX28DRAFT_1433 are separated by 214 nucleotidesEX28DRAFT_1433 and EX28DRAFT_1434 are separated by 2 nucleotides EX28DRAFT_1429: EX28DRAFT_1429 - AraC-type DNA-binding domain-containing proteins, at 1,440,677 to 1,441,585 _1429 EX28DRAFT_1430: EX28DRAFT_1430 - Uncharacterized protein conserved in bacteria, at 1,441,586 to 1,441,903 _1430 EX28DRAFT_1431: EX28DRAFT_1431 - YnbE-like lipoprotein, at 1,441,911 to 1,442,102 _1431 EX28DRAFT_1432: EX28DRAFT_1432 - Dicarboxylate transport, at 1,442,099 to 1,444,738 _1432 EX28DRAFT_1433: EX28DRAFT_1433 - hypothetical protein, at 1,444,953 to 1,445,276 _1433 EX28DRAFT_1434: EX28DRAFT_1434 - Protein of unknown function (DUF4225), at 1,445,279 to 1,446,034 _1434 Position (kb) 1442 1443 1444 1445Strain fitness (log2 ratio) -2 -1 0 1at 1441.351 kb on + strand, within EX28DRAFT_1429at 1441.409 kb on + strand, within EX28DRAFT_1429at 1441.587 kb on + strandat 1441.588 kb on - strandat 1441.623 kb on + strand, within EX28DRAFT_1430at 1441.624 kb on - strand, within EX28DRAFT_1430at 1441.717 kb on - strand, within EX28DRAFT_1430at 1441.880 kb on + strandat 1441.892 kb on + strandat 1441.964 kb on + strand, within EX28DRAFT_1431at 1441.964 kb on + strand, within EX28DRAFT_1431at 1441.965 kb on - strand, within EX28DRAFT_1431at 1441.965 kb on - strand, within EX28DRAFT_1431at 1441.967 kb on + strand, within EX28DRAFT_1431at 1441.968 kb on - strand, within EX28DRAFT_1431at 1441.997 kb on + strand, within EX28DRAFT_1431at 1441.997 kb on + strand, within EX28DRAFT_1431at 1441.998 kb on - strand, within EX28DRAFT_1431at 1441.998 kb on - strand, within EX28DRAFT_1431at 1441.998 kb on - strand, within EX28DRAFT_1431at 1442.233 kb on + strandat 1442.236 kb on - strandat 1442.303 kb on + strandat 1442.358 kb on + strandat 1442.359 kb on - strandat 1442.392 kb on + strand, within EX28DRAFT_1432at 1442.393 kb on - strand, within EX28DRAFT_1432at 1442.395 kb on + strand, within EX28DRAFT_1432at 1442.473 kb on + strand, within EX28DRAFT_1432at 1442.473 kb on + strand, within EX28DRAFT_1432at 1442.581 kb on + strand, within EX28DRAFT_1432at 1442.581 kb on + strand, within EX28DRAFT_1432at 1442.581 kb on + strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.707 kb on - strand, within EX28DRAFT_1432at 1442.707 kb on - strand, within EX28DRAFT_1432at 1442.766 kb on - strand, within EX28DRAFT_1432at 1442.950 kb on - strand, within EX28DRAFT_1432at 1443.113 kb on - strand, within EX28DRAFT_1432at 1443.353 kb on - strand, within EX28DRAFT_1432at 1443.716 kb on - strand, within EX28DRAFT_1432at 1444.082 kb on + strand, within EX28DRAFT_1432at 1444.082 kb on + strand, within EX28DRAFT_1432at 1444.246 kb on + strand, within EX28DRAFT_1432at 1444.268 kb on - strand, within EX28DRAFT_1432at 1444.691 kb on + strandat 1444.847 kb on + strandat 1444.851 kb on - strandat 1444.853 kb on + strandat 1444.853 kb on + strandat 1444.893 kb on - strandat 1444.930 kb on - strandat 1444.954 kb on + strandat 1444.958 kb on - strandat 1444.961 kb on + strandat 1444.962 kb on - strandat 1444.962 kb on - strandat 1444.962 kb on - strandat 1445.302 kb on - strandat 1445.380 kb on + strand, within EX28DRAFT_1434at 1445.381 kb on - strand, within EX28DRAFT_1434at 1445.382 kb on + strand, within EX28DRAFT_1434at 1445.383 kb on - strand, within EX28DRAFT_1434at 1445.383 kb on - strand, within EX28DRAFT_1434at 1445.471 kb on - strand, within EX28DRAFT_1434at 1445.516 kb on + strand, within EX28DRAFT_1434at 1445.516 kb on + strand, within EX28DRAFT_1434at 1445.517 kb on - strand, within EX28DRAFT_1434at 1445.549 kb on + strand, within EX28DRAFT_1434at 1445.583 kb on + strand, within EX28DRAFT_1434at 1445.583 kb on + strand, within EX28DRAFT_1434at 1445.584 kb on - strand, within EX28DRAFT_1434at 1445.584 kb on - strand, within EX28DRAFT_1434at 1445.599 kb on - strand, within EX28DRAFT_1434at 1445.621 kb on - strand, within EX28DRAFT_1434at 1445.626 kb on + strand, within EX28DRAFT_1434at 1445.689 kb on - strand, within EX28DRAFT_1434at 1445.725 kb on + strand, within EX28DRAFT_1434

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,441,351 + EX28DRAFT_1429 0.74 -0.0
1,441,409 + EX28DRAFT_1429 0.81 -0.2
1,441,587 + -0.3
1,441,588 - -0.0
1,441,623 + EX28DRAFT_1430 0.12 +0.4
1,441,624 - EX28DRAFT_1430 0.12 +0.4
1,441,717 - EX28DRAFT_1430 0.41 -0.5
1,441,880 + +0.1
1,441,892 + +0.8
1,441,964 + EX28DRAFT_1431 0.28 -0.2
1,441,964 + EX28DRAFT_1431 0.28 -0.4
1,441,965 - EX28DRAFT_1431 0.28 +1.0
1,441,965 - EX28DRAFT_1431 0.28 -0.3
1,441,967 + EX28DRAFT_1431 0.29 +0.5
1,441,968 - EX28DRAFT_1431 0.30 +0.7
1,441,997 + EX28DRAFT_1431 0.45 -1.4
1,441,997 + EX28DRAFT_1431 0.45 +0.3
1,441,998 - EX28DRAFT_1431 0.45 -1.1
1,441,998 - EX28DRAFT_1431 0.45 +0.3
1,441,998 - EX28DRAFT_1431 0.45 +0.5
1,442,233 + +0.4
1,442,236 - -0.9
1,442,303 + +1.2
1,442,358 + -0.4
1,442,359 - -1.0
1,442,392 + EX28DRAFT_1432 0.11 +0.7
1,442,393 - EX28DRAFT_1432 0.11 +0.6
1,442,395 + EX28DRAFT_1432 0.11 -0.4
1,442,473 + EX28DRAFT_1432 0.14 -0.3
1,442,473 + EX28DRAFT_1432 0.14 -0.3
1,442,581 + EX28DRAFT_1432 0.18 +0.6
1,442,581 + EX28DRAFT_1432 0.18 +1.5
1,442,581 + EX28DRAFT_1432 0.18 +0.6
1,442,582 - EX28DRAFT_1432 0.18 +0.6
1,442,582 - EX28DRAFT_1432 0.18 +0.4
1,442,582 - EX28DRAFT_1432 0.18 +0.5
1,442,582 - EX28DRAFT_1432 0.18 -0.5
1,442,582 - EX28DRAFT_1432 0.18 -1.1
1,442,707 - EX28DRAFT_1432 0.23 +0.5
1,442,707 - EX28DRAFT_1432 0.23 -0.0
1,442,766 - EX28DRAFT_1432 0.25 -0.1
1,442,950 - EX28DRAFT_1432 0.32 +0.1
1,443,113 - EX28DRAFT_1432 0.38 +0.5
1,443,353 - EX28DRAFT_1432 0.47 +0.0
1,443,716 - EX28DRAFT_1432 0.61 +0.2
1,444,082 + EX28DRAFT_1432 0.75 -1.4
1,444,082 + EX28DRAFT_1432 0.75 +0.1
1,444,246 + EX28DRAFT_1432 0.81 +0.1
1,444,268 - EX28DRAFT_1432 0.82 +0.1
1,444,691 + +0.6
1,444,847 + -2.0
1,444,851 - -0.5
1,444,853 + -0.4
1,444,853 + -0.3
1,444,893 - -0.4
1,444,930 - -0.3
1,444,954 + +0.1
1,444,958 - +0.5
1,444,961 + -0.4
1,444,962 - -0.2
1,444,962 - +0.8
1,444,962 - +0.0
1,445,302 - +0.5
1,445,380 + EX28DRAFT_1434 0.13 -0.4
1,445,381 - EX28DRAFT_1434 0.13 +0.1
1,445,382 + EX28DRAFT_1434 0.14 +0.7
1,445,383 - EX28DRAFT_1434 0.14 -0.4
1,445,383 - EX28DRAFT_1434 0.14 -0.1
1,445,471 - EX28DRAFT_1434 0.25 -0.2
1,445,516 + EX28DRAFT_1434 0.31 +0.4
1,445,516 + EX28DRAFT_1434 0.31 -0.4
1,445,517 - EX28DRAFT_1434 0.31 +0.1
1,445,549 + EX28DRAFT_1434 0.36 +0.1
1,445,583 + EX28DRAFT_1434 0.40 +0.0
1,445,583 + EX28DRAFT_1434 0.40 +0.4
1,445,584 - EX28DRAFT_1434 0.40 +0.2
1,445,584 - EX28DRAFT_1434 0.40 +1.3
1,445,599 - EX28DRAFT_1434 0.42 +0.9
1,445,621 - EX28DRAFT_1434 0.45 +0.1
1,445,626 + EX28DRAFT_1434 0.46 -0.1
1,445,689 - EX28DRAFT_1434 0.54 -0.4
1,445,725 + EX28DRAFT_1434 0.59 -0.4

Or see this region's nucleotide sequence