Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1050

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1048 and EX28DRAFT_1049 are separated by 345 nucleotidesEX28DRAFT_1049 and EX28DRAFT_1050 are separated by 110 nucleotidesEX28DRAFT_1050 and EX28DRAFT_1051 overlap by 4 nucleotides EX28DRAFT_1048: EX28DRAFT_1048 - PAS domain S-box, at 1,059,134 to 1,060,669 _1048 EX28DRAFT_1049: EX28DRAFT_1049 - Adenylate kinase and related kinases, at 1,061,015 to 1,061,554 _1049 EX28DRAFT_1050: EX28DRAFT_1050 - luciferase family oxidoreductase, group 1, at 1,061,665 to 1,062,666 _1050 EX28DRAFT_1051: EX28DRAFT_1051 - amidohydrolase, at 1,062,663 to 1,063,784 _1051 Position (kb) 1061 1062 1063Strain fitness (log2 ratio) -1 0 1 2at 1061.000 kb on + strandat 1061.001 kb on - strandat 1061.097 kb on - strand, within EX28DRAFT_1049at 1061.118 kb on - strand, within EX28DRAFT_1049at 1061.216 kb on + strand, within EX28DRAFT_1049at 1061.217 kb on - strand, within EX28DRAFT_1049at 1061.332 kb on + strand, within EX28DRAFT_1049at 1061.333 kb on - strand, within EX28DRAFT_1049at 1061.482 kb on + strand, within EX28DRAFT_1049at 1061.538 kb on + strandat 1061.539 kb on - strandat 1061.539 kb on - strandat 1061.546 kb on + strandat 1061.553 kb on - strandat 1061.553 kb on - strandat 1061.563 kb on + strandat 1061.563 kb on + strandat 1061.563 kb on + strandat 1061.564 kb on - strandat 1061.564 kb on - strandat 1061.565 kb on + strandat 1061.565 kb on + strandat 1061.568 kb on - strandat 1061.586 kb on + strandat 1061.628 kb on - strandat 1061.691 kb on + strandat 1061.692 kb on - strandat 1061.922 kb on + strand, within EX28DRAFT_1050at 1061.923 kb on - strand, within EX28DRAFT_1050at 1062.288 kb on + strand, within EX28DRAFT_1050at 1062.439 kb on + strand, within EX28DRAFT_1050at 1062.645 kb on + strandat 1062.662 kb on + strandat 1062.782 kb on + strand, within EX28DRAFT_1051at 1062.796 kb on - strand, within EX28DRAFT_1051at 1062.863 kb on + strand, within EX28DRAFT_1051at 1062.864 kb on - strand, within EX28DRAFT_1051at 1062.905 kb on + strand, within EX28DRAFT_1051at 1063.170 kb on + strand, within EX28DRAFT_1051at 1063.507 kb on - strand, within EX28DRAFT_1051

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
1,061,000 + -0.6
1,061,001 - +0.7
1,061,097 - EX28DRAFT_1049 0.15 -0.4
1,061,118 - EX28DRAFT_1049 0.19 -0.3
1,061,216 + EX28DRAFT_1049 0.37 -0.0
1,061,217 - EX28DRAFT_1049 0.37 +0.5
1,061,332 + EX28DRAFT_1049 0.59 -0.3
1,061,333 - EX28DRAFT_1049 0.59 -0.2
1,061,482 + EX28DRAFT_1049 0.86 -0.1
1,061,538 + +0.1
1,061,539 - -0.7
1,061,539 - +0.0
1,061,546 + -0.0
1,061,553 - +0.0
1,061,553 - -0.4
1,061,563 + +0.4
1,061,563 + +0.6
1,061,563 + -0.4
1,061,564 - -0.7
1,061,564 - -1.3
1,061,565 + +0.1
1,061,565 + +0.0
1,061,568 - -1.0
1,061,586 + -0.1
1,061,628 - +2.0
1,061,691 + -1.3
1,061,692 - +0.1
1,061,922 + EX28DRAFT_1050 0.26 -0.1
1,061,923 - EX28DRAFT_1050 0.26 -0.3
1,062,288 + EX28DRAFT_1050 0.62 -1.4
1,062,439 + EX28DRAFT_1050 0.77 -1.2
1,062,645 + +0.6
1,062,662 + +0.1
1,062,782 + EX28DRAFT_1051 0.11 -0.1
1,062,796 - EX28DRAFT_1051 0.12 -0.1
1,062,863 + EX28DRAFT_1051 0.18 +0.6
1,062,864 - EX28DRAFT_1051 0.18 -0.3
1,062,905 + EX28DRAFT_1051 0.22 -1.3
1,063,170 + EX28DRAFT_1051 0.45 +0.3
1,063,507 - EX28DRAFT_1051 0.75 +0.4

Or see this region's nucleotide sequence