Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1014 and EX28DRAFT_1015 are separated by 90 nucleotides EX28DRAFT_1015 and EX28DRAFT_1016 are separated by 3 nucleotides EX28DRAFT_1016 and EX28DRAFT_1017 are separated by 482 nucleotides
EX28DRAFT_1014: EX28DRAFT_1014 - O-methyltransferase, at 1,019,965 to 1,020,996
_1014
EX28DRAFT_1015: EX28DRAFT_1015 - hypothetical protein, at 1,021,087 to 1,021,284
_1015
EX28DRAFT_1016: EX28DRAFT_1016 - Uncharacterized conserved protein, at 1,021,288 to 1,021,710
_1016
EX28DRAFT_1017: EX28DRAFT_1017 - Outer membrane protein (porin), at 1,022,193 to 1,023,302
_1017
Position (kb)
1021
1022 Strain fitness (log2 ratio)
-2
-1
0
1 at 1020.336 kb on - strand, within EX28DRAFT_1014 at 1020.336 kb on - strand, within EX28DRAFT_1014 at 1020.447 kb on + strand, within EX28DRAFT_1014 at 1020.447 kb on + strand, within EX28DRAFT_1014 at 1020.481 kb on - strand, within EX28DRAFT_1014 at 1020.705 kb on + strand, within EX28DRAFT_1014 at 1020.706 kb on - strand, within EX28DRAFT_1014 at 1020.709 kb on + strand, within EX28DRAFT_1014 at 1020.709 kb on + strand, within EX28DRAFT_1014 at 1020.792 kb on - strand, within EX28DRAFT_1014 at 1020.964 kb on + strand at 1020.986 kb on + strand at 1020.987 kb on - strand at 1020.987 kb on - strand at 1021.015 kb on - strand at 1021.047 kb on + strand at 1021.048 kb on - strand at 1021.072 kb on - strand at 1021.086 kb on + strand at 1021.185 kb on + strand, within EX28DRAFT_1015 at 1021.232 kb on + strand, within EX28DRAFT_1015 at 1021.282 kb on + strand at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.459 kb on - strand, within EX28DRAFT_1016 at 1021.731 kb on + strand at 1021.731 kb on + strand at 1021.745 kb on + strand at 1021.745 kb on + strand at 1021.746 kb on - strand at 1021.746 kb on - strand at 1021.778 kb on + strand at 1021.865 kb on - strand at 1021.941 kb on - strand at 1022.006 kb on + strand at 1022.006 kb on + strand at 1022.007 kb on - strand at 1022.019 kb on - strand at 1022.030 kb on + strand at 1022.031 kb on - strand at 1022.105 kb on + strand at 1022.106 kb on - strand at 1022.106 kb on - strand at 1022.127 kb on + strand at 1022.177 kb on - strand at 1022.220 kb on + strand at 1022.254 kb on + strand at 1022.299 kb on + strand at 1022.323 kb on + strand, within EX28DRAFT_1017 at 1022.326 kb on + strand, within EX28DRAFT_1017 at 1022.326 kb on + strand, within EX28DRAFT_1017 at 1022.327 kb on - strand, within EX28DRAFT_1017 at 1022.347 kb on + strand, within EX28DRAFT_1017 at 1022.347 kb on + strand, within EX28DRAFT_1017 at 1022.348 kb on - strand, within EX28DRAFT_1017 at 1022.351 kb on + strand, within EX28DRAFT_1017 at 1022.390 kb on + strand, within EX28DRAFT_1017 at 1022.492 kb on + strand, within EX28DRAFT_1017 at 1022.495 kb on + strand, within EX28DRAFT_1017 at 1022.495 kb on + strand, within EX28DRAFT_1017 at 1022.495 kb on + strand, within EX28DRAFT_1017 at 1022.496 kb on - strand, within EX28DRAFT_1017 at 1022.513 kb on + strand, within EX28DRAFT_1017 at 1022.530 kb on + strand, within EX28DRAFT_1017 at 1022.530 kb on + strand, within EX28DRAFT_1017 at 1022.545 kb on + strand, within EX28DRAFT_1017 at 1022.546 kb on - strand, within EX28DRAFT_1017 at 1022.552 kb on + strand, within EX28DRAFT_1017 at 1022.563 kb on + strand, within EX28DRAFT_1017 at 1022.564 kb on - strand, within EX28DRAFT_1017 at 1022.648 kb on + strand, within EX28DRAFT_1017 at 1022.648 kb on + strand, within EX28DRAFT_1017 at 1022.648 kb on + strand, within EX28DRAFT_1017 at 1022.649 kb on - strand, within EX28DRAFT_1017 at 1022.649 kb on - strand, within EX28DRAFT_1017 at 1022.650 kb on + strand, within EX28DRAFT_1017 at 1022.650 kb on + strand, within EX28DRAFT_1017 at 1022.651 kb on - strand, within EX28DRAFT_1017 at 1022.651 kb on - strand, within EX28DRAFT_1017 at 1022.666 kb on + strand, within EX28DRAFT_1017 at 1022.666 kb on + strand, within EX28DRAFT_1017 at 1022.686 kb on + strand, within EX28DRAFT_1017 at 1022.686 kb on + strand, within EX28DRAFT_1017 at 1022.687 kb on - strand, within EX28DRAFT_1017 at 1022.687 kb on - strand, within EX28DRAFT_1017 at 1022.687 kb on - strand, within EX28DRAFT_1017 at 1022.700 kb on - strand, within EX28DRAFT_1017
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,020,336 - EX28DRAFT_1014 0.36 -0.2 1,020,336 - EX28DRAFT_1014 0.36 -0.2 1,020,447 + EX28DRAFT_1014 0.47 +0.1 1,020,447 + EX28DRAFT_1014 0.47 -1.3 1,020,481 - EX28DRAFT_1014 0.50 -0.0 1,020,705 + EX28DRAFT_1014 0.72 -0.8 1,020,706 - EX28DRAFT_1014 0.72 +0.0 1,020,709 + EX28DRAFT_1014 0.72 +0.2 1,020,709 + EX28DRAFT_1014 0.72 -0.2 1,020,792 - EX28DRAFT_1014 0.80 +0.7 1,020,964 + -1.3 1,020,986 + +1.0 1,020,987 - +0.7 1,020,987 - +0.1 1,021,015 - +0.3 1,021,047 + -2.5 1,021,048 - +0.1 1,021,072 - -1.9 1,021,086 + +0.8 1,021,185 + EX28DRAFT_1015 0.49 -0.7 1,021,232 + EX28DRAFT_1015 0.73 +1.7 1,021,282 + -0.3 1,021,458 + EX28DRAFT_1016 0.40 -1.0 1,021,458 + EX28DRAFT_1016 0.40 -0.5 1,021,459 - EX28DRAFT_1016 0.40 -0.5 1,021,731 + +1.1 1,021,731 + -0.2 1,021,745 + +0.2 1,021,745 + +0.3 1,021,746 - +0.6 1,021,746 - +0.3 1,021,778 + -0.1 1,021,865 - -0.9 1,021,941 - -0.5 1,022,006 + +0.3 1,022,006 + -0.7 1,022,007 - -0.3 1,022,019 - +0.1 1,022,030 + +0.0 1,022,031 - -0.1 1,022,105 + +1.3 1,022,106 - +0.4 1,022,106 - -0.7 1,022,127 + -1.5 1,022,177 - +0.1 1,022,220 + -0.3 1,022,254 + -0.2 1,022,299 + +0.3 1,022,323 + EX28DRAFT_1017 0.12 +0.1 1,022,326 + EX28DRAFT_1017 0.12 +0.3 1,022,326 + EX28DRAFT_1017 0.12 -0.1 1,022,327 - EX28DRAFT_1017 0.12 +0.5 1,022,347 + EX28DRAFT_1017 0.14 -0.8 1,022,347 + EX28DRAFT_1017 0.14 -0.1 1,022,348 - EX28DRAFT_1017 0.14 +0.3 1,022,351 + EX28DRAFT_1017 0.14 -1.2 1,022,390 + EX28DRAFT_1017 0.18 +0.6 1,022,492 + EX28DRAFT_1017 0.27 +0.5 1,022,495 + EX28DRAFT_1017 0.27 +0.1 1,022,495 + EX28DRAFT_1017 0.27 +0.8 1,022,495 + EX28DRAFT_1017 0.27 +0.1 1,022,496 - EX28DRAFT_1017 0.27 -1.2 1,022,513 + EX28DRAFT_1017 0.29 +0.2 1,022,530 + EX28DRAFT_1017 0.30 -0.0 1,022,530 + EX28DRAFT_1017 0.30 -0.5 1,022,545 + EX28DRAFT_1017 0.32 +0.5 1,022,546 - EX28DRAFT_1017 0.32 +0.2 1,022,552 + EX28DRAFT_1017 0.32 +0.0 1,022,563 + EX28DRAFT_1017 0.33 -0.5 1,022,564 - EX28DRAFT_1017 0.33 -0.0 1,022,648 + EX28DRAFT_1017 0.41 +0.5 1,022,648 + EX28DRAFT_1017 0.41 +0.5 1,022,648 + EX28DRAFT_1017 0.41 -0.8 1,022,649 - EX28DRAFT_1017 0.41 -0.4 1,022,649 - EX28DRAFT_1017 0.41 -0.4 1,022,650 + EX28DRAFT_1017 0.41 -0.1 1,022,650 + EX28DRAFT_1017 0.41 +0.5 1,022,651 - EX28DRAFT_1017 0.41 +0.1 1,022,651 - EX28DRAFT_1017 0.41 +0.2 1,022,666 + EX28DRAFT_1017 0.43 -0.5 1,022,666 + EX28DRAFT_1017 0.43 +0.2 1,022,686 + EX28DRAFT_1017 0.44 +0.1 1,022,686 + EX28DRAFT_1017 0.44 +0.3 1,022,687 - EX28DRAFT_1017 0.45 -0.9 1,022,687 - EX28DRAFT_1017 0.45 +0.4 1,022,687 - EX28DRAFT_1017 0.45 -0.4 1,022,700 - EX28DRAFT_1017 0.46 +0.1
Or see this region's nucleotide sequence