Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1016

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1014 and EX28DRAFT_1015 are separated by 90 nucleotidesEX28DRAFT_1015 and EX28DRAFT_1016 are separated by 3 nucleotidesEX28DRAFT_1016 and EX28DRAFT_1017 are separated by 482 nucleotides EX28DRAFT_1014: EX28DRAFT_1014 - O-methyltransferase, at 1,019,965 to 1,020,996 _1014 EX28DRAFT_1015: EX28DRAFT_1015 - hypothetical protein, at 1,021,087 to 1,021,284 _1015 EX28DRAFT_1016: EX28DRAFT_1016 - Uncharacterized conserved protein, at 1,021,288 to 1,021,710 _1016 EX28DRAFT_1017: EX28DRAFT_1017 - Outer membrane protein (porin), at 1,022,193 to 1,023,302 _1017 Position (kb) 1021 1022Strain fitness (log2 ratio) -2 -1 0 1at 1020.336 kb on - strand, within EX28DRAFT_1014at 1020.336 kb on - strand, within EX28DRAFT_1014at 1020.447 kb on + strand, within EX28DRAFT_1014at 1020.447 kb on + strand, within EX28DRAFT_1014at 1020.481 kb on - strand, within EX28DRAFT_1014at 1020.705 kb on + strand, within EX28DRAFT_1014at 1020.706 kb on - strand, within EX28DRAFT_1014at 1020.709 kb on + strand, within EX28DRAFT_1014at 1020.709 kb on + strand, within EX28DRAFT_1014at 1020.792 kb on - strand, within EX28DRAFT_1014at 1020.964 kb on + strandat 1020.986 kb on + strandat 1020.987 kb on - strandat 1020.987 kb on - strandat 1021.015 kb on - strandat 1021.047 kb on + strandat 1021.048 kb on - strandat 1021.072 kb on - strandat 1021.086 kb on + strandat 1021.185 kb on + strand, within EX28DRAFT_1015at 1021.232 kb on + strand, within EX28DRAFT_1015at 1021.282 kb on + strandat 1021.458 kb on + strand, within EX28DRAFT_1016at 1021.458 kb on + strand, within EX28DRAFT_1016at 1021.459 kb on - strand, within EX28DRAFT_1016at 1021.731 kb on + strandat 1021.731 kb on + strandat 1021.745 kb on + strandat 1021.745 kb on + strandat 1021.746 kb on - strandat 1021.746 kb on - strandat 1021.778 kb on + strandat 1021.865 kb on - strandat 1021.941 kb on - strandat 1022.006 kb on + strandat 1022.006 kb on + strandat 1022.007 kb on - strandat 1022.019 kb on - strandat 1022.030 kb on + strandat 1022.031 kb on - strandat 1022.105 kb on + strandat 1022.106 kb on - strandat 1022.106 kb on - strandat 1022.127 kb on + strandat 1022.177 kb on - strandat 1022.220 kb on + strandat 1022.254 kb on + strandat 1022.299 kb on + strandat 1022.323 kb on + strand, within EX28DRAFT_1017at 1022.326 kb on + strand, within EX28DRAFT_1017at 1022.326 kb on + strand, within EX28DRAFT_1017at 1022.327 kb on - strand, within EX28DRAFT_1017at 1022.347 kb on + strand, within EX28DRAFT_1017at 1022.347 kb on + strand, within EX28DRAFT_1017at 1022.348 kb on - strand, within EX28DRAFT_1017at 1022.351 kb on + strand, within EX28DRAFT_1017at 1022.390 kb on + strand, within EX28DRAFT_1017at 1022.492 kb on + strand, within EX28DRAFT_1017at 1022.495 kb on + strand, within EX28DRAFT_1017at 1022.495 kb on + strand, within EX28DRAFT_1017at 1022.495 kb on + strand, within EX28DRAFT_1017at 1022.496 kb on - strand, within EX28DRAFT_1017at 1022.513 kb on + strand, within EX28DRAFT_1017at 1022.530 kb on + strand, within EX28DRAFT_1017at 1022.530 kb on + strand, within EX28DRAFT_1017at 1022.545 kb on + strand, within EX28DRAFT_1017at 1022.546 kb on - strand, within EX28DRAFT_1017at 1022.552 kb on + strand, within EX28DRAFT_1017at 1022.563 kb on + strand, within EX28DRAFT_1017at 1022.564 kb on - strand, within EX28DRAFT_1017at 1022.648 kb on + strand, within EX28DRAFT_1017at 1022.648 kb on + strand, within EX28DRAFT_1017at 1022.648 kb on + strand, within EX28DRAFT_1017at 1022.649 kb on - strand, within EX28DRAFT_1017at 1022.649 kb on - strand, within EX28DRAFT_1017at 1022.650 kb on + strand, within EX28DRAFT_1017at 1022.650 kb on + strand, within EX28DRAFT_1017at 1022.651 kb on - strand, within EX28DRAFT_1017at 1022.651 kb on - strand, within EX28DRAFT_1017at 1022.666 kb on + strand, within EX28DRAFT_1017at 1022.666 kb on + strand, within EX28DRAFT_1017at 1022.686 kb on + strand, within EX28DRAFT_1017at 1022.686 kb on + strand, within EX28DRAFT_1017at 1022.687 kb on - strand, within EX28DRAFT_1017at 1022.687 kb on - strand, within EX28DRAFT_1017at 1022.687 kb on - strand, within EX28DRAFT_1017at 1022.700 kb on - strand, within EX28DRAFT_1017

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,020,336 - EX28DRAFT_1014 0.36 -0.2
1,020,336 - EX28DRAFT_1014 0.36 -0.2
1,020,447 + EX28DRAFT_1014 0.47 +0.1
1,020,447 + EX28DRAFT_1014 0.47 -1.3
1,020,481 - EX28DRAFT_1014 0.50 -0.0
1,020,705 + EX28DRAFT_1014 0.72 -0.8
1,020,706 - EX28DRAFT_1014 0.72 +0.0
1,020,709 + EX28DRAFT_1014 0.72 +0.2
1,020,709 + EX28DRAFT_1014 0.72 -0.2
1,020,792 - EX28DRAFT_1014 0.80 +0.7
1,020,964 + -1.3
1,020,986 + +1.0
1,020,987 - +0.7
1,020,987 - +0.1
1,021,015 - +0.3
1,021,047 + -2.5
1,021,048 - +0.1
1,021,072 - -1.9
1,021,086 + +0.8
1,021,185 + EX28DRAFT_1015 0.49 -0.7
1,021,232 + EX28DRAFT_1015 0.73 +1.7
1,021,282 + -0.3
1,021,458 + EX28DRAFT_1016 0.40 -1.0
1,021,458 + EX28DRAFT_1016 0.40 -0.5
1,021,459 - EX28DRAFT_1016 0.40 -0.5
1,021,731 + +1.1
1,021,731 + -0.2
1,021,745 + +0.2
1,021,745 + +0.3
1,021,746 - +0.6
1,021,746 - +0.3
1,021,778 + -0.1
1,021,865 - -0.9
1,021,941 - -0.5
1,022,006 + +0.3
1,022,006 + -0.7
1,022,007 - -0.3
1,022,019 - +0.1
1,022,030 + +0.0
1,022,031 - -0.1
1,022,105 + +1.3
1,022,106 - +0.4
1,022,106 - -0.7
1,022,127 + -1.5
1,022,177 - +0.1
1,022,220 + -0.3
1,022,254 + -0.2
1,022,299 + +0.3
1,022,323 + EX28DRAFT_1017 0.12 +0.1
1,022,326 + EX28DRAFT_1017 0.12 +0.3
1,022,326 + EX28DRAFT_1017 0.12 -0.1
1,022,327 - EX28DRAFT_1017 0.12 +0.5
1,022,347 + EX28DRAFT_1017 0.14 -0.8
1,022,347 + EX28DRAFT_1017 0.14 -0.1
1,022,348 - EX28DRAFT_1017 0.14 +0.3
1,022,351 + EX28DRAFT_1017 0.14 -1.2
1,022,390 + EX28DRAFT_1017 0.18 +0.6
1,022,492 + EX28DRAFT_1017 0.27 +0.5
1,022,495 + EX28DRAFT_1017 0.27 +0.1
1,022,495 + EX28DRAFT_1017 0.27 +0.8
1,022,495 + EX28DRAFT_1017 0.27 +0.1
1,022,496 - EX28DRAFT_1017 0.27 -1.2
1,022,513 + EX28DRAFT_1017 0.29 +0.2
1,022,530 + EX28DRAFT_1017 0.30 -0.0
1,022,530 + EX28DRAFT_1017 0.30 -0.5
1,022,545 + EX28DRAFT_1017 0.32 +0.5
1,022,546 - EX28DRAFT_1017 0.32 +0.2
1,022,552 + EX28DRAFT_1017 0.32 +0.0
1,022,563 + EX28DRAFT_1017 0.33 -0.5
1,022,564 - EX28DRAFT_1017 0.33 -0.0
1,022,648 + EX28DRAFT_1017 0.41 +0.5
1,022,648 + EX28DRAFT_1017 0.41 +0.5
1,022,648 + EX28DRAFT_1017 0.41 -0.8
1,022,649 - EX28DRAFT_1017 0.41 -0.4
1,022,649 - EX28DRAFT_1017 0.41 -0.4
1,022,650 + EX28DRAFT_1017 0.41 -0.1
1,022,650 + EX28DRAFT_1017 0.41 +0.5
1,022,651 - EX28DRAFT_1017 0.41 +0.1
1,022,651 - EX28DRAFT_1017 0.41 +0.2
1,022,666 + EX28DRAFT_1017 0.43 -0.5
1,022,666 + EX28DRAFT_1017 0.43 +0.2
1,022,686 + EX28DRAFT_1017 0.44 +0.1
1,022,686 + EX28DRAFT_1017 0.44 +0.3
1,022,687 - EX28DRAFT_1017 0.45 -0.9
1,022,687 - EX28DRAFT_1017 0.45 +0.4
1,022,687 - EX28DRAFT_1017 0.45 -0.4
1,022,700 - EX28DRAFT_1017 0.46 +0.1

Or see this region's nucleotide sequence