Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1000

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0999 and EX28DRAFT_1000 are separated by 90 nucleotidesEX28DRAFT_1000 and EX28DRAFT_1001 are separated by 432 nucleotides EX28DRAFT_0999: EX28DRAFT_0999 - ABC-type oligopeptide transport system, periplasmic component, at 1,002,336 to 1,003,952 _0999 EX28DRAFT_1000: EX28DRAFT_1000 - intracellular protease, PfpI family, at 1,004,043 to 1,004,606 _1000 EX28DRAFT_1001: EX28DRAFT_1001 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,005,039 to 1,006,271 _1001 Position (kb) 1004 1005Strain fitness (log2 ratio) -2 -1 0 1 2at 1003.100 kb on + strand, within EX28DRAFT_0999at 1003.122 kb on - strand, within EX28DRAFT_0999at 1003.155 kb on + strand, within EX28DRAFT_0999at 1003.191 kb on + strand, within EX28DRAFT_0999at 1003.193 kb on + strand, within EX28DRAFT_0999at 1003.215 kb on + strand, within EX28DRAFT_0999at 1003.215 kb on + strand, within EX28DRAFT_0999at 1003.215 kb on + strand, within EX28DRAFT_0999at 1003.215 kb on + strand, within EX28DRAFT_0999at 1003.216 kb on - strand, within EX28DRAFT_0999at 1003.216 kb on - strand, within EX28DRAFT_0999at 1003.216 kb on - strand, within EX28DRAFT_0999at 1003.218 kb on + strand, within EX28DRAFT_0999at 1003.219 kb on - strand, within EX28DRAFT_0999at 1003.219 kb on - strand, within EX28DRAFT_0999at 1003.221 kb on + strand, within EX28DRAFT_0999at 1003.221 kb on + strand, within EX28DRAFT_0999at 1003.222 kb on - strand, within EX28DRAFT_0999at 1003.222 kb on - strand, within EX28DRAFT_0999at 1003.318 kb on + strand, within EX28DRAFT_0999at 1003.318 kb on + strand, within EX28DRAFT_0999at 1003.318 kb on + strand, within EX28DRAFT_0999at 1003.319 kb on - strand, within EX28DRAFT_0999at 1003.319 kb on - strand, within EX28DRAFT_0999at 1003.319 kb on - strand, within EX28DRAFT_0999at 1003.319 kb on - strand, within EX28DRAFT_0999at 1003.322 kb on + strand, within EX28DRAFT_0999at 1003.322 kb on + strand, within EX28DRAFT_0999at 1003.492 kb on - strand, within EX28DRAFT_0999at 1003.538 kb on + strand, within EX28DRAFT_0999at 1003.539 kb on - strand, within EX28DRAFT_0999at 1003.656 kb on + strand, within EX28DRAFT_0999at 1003.657 kb on - strand, within EX28DRAFT_0999at 1003.707 kb on - strand, within EX28DRAFT_0999at 1003.709 kb on + strand, within EX28DRAFT_0999at 1003.710 kb on - strand, within EX28DRAFT_0999at 1003.845 kb on + strandat 1003.851 kb on + strandat 1003.851 kb on + strandat 1003.852 kb on - strandat 1003.935 kb on + strandat 1003.935 kb on + strandat 1003.935 kb on + strandat 1003.936 kb on - strandat 1003.936 kb on - strandat 1003.959 kb on - strandat 1003.995 kb on - strandat 1004.061 kb on - strandat 1004.474 kb on + strand, within EX28DRAFT_1000at 1004.476 kb on + strand, within EX28DRAFT_1000at 1004.477 kb on - strand, within EX28DRAFT_1000at 1004.477 kb on - strand, within EX28DRAFT_1000at 1004.572 kb on + strandat 1004.637 kb on - strandat 1004.641 kb on + strandat 1004.641 kb on + strandat 1004.641 kb on + strandat 1004.642 kb on - strandat 1004.642 kb on - strandat 1004.700 kb on + strandat 1004.700 kb on + strandat 1004.713 kb on - strandat 1004.781 kb on + strandat 1004.791 kb on - strandat 1004.936 kb on - strandat 1004.948 kb on - strandat 1004.974 kb on + strandat 1004.974 kb on + strandat 1005.011 kb on + strandat 1005.185 kb on + strand, within EX28DRAFT_1001at 1005.186 kb on - strand, within EX28DRAFT_1001at 1005.309 kb on - strand, within EX28DRAFT_1001at 1005.375 kb on + strand, within EX28DRAFT_1001at 1005.378 kb on - strand, within EX28DRAFT_1001at 1005.378 kb on - strand, within EX28DRAFT_1001at 1005.441 kb on - strand, within EX28DRAFT_1001at 1005.511 kb on - strand, within EX28DRAFT_1001at 1005.592 kb on + strand, within EX28DRAFT_1001at 1005.593 kb on - strand, within EX28DRAFT_1001

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,003,100 + EX28DRAFT_0999 0.47 +0.9
1,003,122 - EX28DRAFT_0999 0.49 +0.1
1,003,155 + EX28DRAFT_0999 0.51 +0.9
1,003,191 + EX28DRAFT_0999 0.53 -1.5
1,003,193 + EX28DRAFT_0999 0.53 -2.3
1,003,215 + EX28DRAFT_0999 0.54 +0.8
1,003,215 + EX28DRAFT_0999 0.54 +0.2
1,003,215 + EX28DRAFT_0999 0.54 +0.1
1,003,215 + EX28DRAFT_0999 0.54 -0.1
1,003,216 - EX28DRAFT_0999 0.54 -0.1
1,003,216 - EX28DRAFT_0999 0.54 -0.7
1,003,216 - EX28DRAFT_0999 0.54 -0.3
1,003,218 + EX28DRAFT_0999 0.55 +0.0
1,003,219 - EX28DRAFT_0999 0.55 +0.0
1,003,219 - EX28DRAFT_0999 0.55 -2.6
1,003,221 + EX28DRAFT_0999 0.55 +0.1
1,003,221 + EX28DRAFT_0999 0.55 -0.7
1,003,222 - EX28DRAFT_0999 0.55 -2.3
1,003,222 - EX28DRAFT_0999 0.55 +0.5
1,003,318 + EX28DRAFT_0999 0.61 -0.2
1,003,318 + EX28DRAFT_0999 0.61 -0.3
1,003,318 + EX28DRAFT_0999 0.61 +2.0
1,003,319 - EX28DRAFT_0999 0.61 +0.2
1,003,319 - EX28DRAFT_0999 0.61 -0.2
1,003,319 - EX28DRAFT_0999 0.61 +0.5
1,003,319 - EX28DRAFT_0999 0.61 -1.2
1,003,322 + EX28DRAFT_0999 0.61 +0.5
1,003,322 + EX28DRAFT_0999 0.61 +1.0
1,003,492 - EX28DRAFT_0999 0.71 +0.8
1,003,538 + EX28DRAFT_0999 0.74 -1.9
1,003,539 - EX28DRAFT_0999 0.74 -0.1
1,003,656 + EX28DRAFT_0999 0.82 +0.3
1,003,657 - EX28DRAFT_0999 0.82 -0.3
1,003,707 - EX28DRAFT_0999 0.85 -0.3
1,003,709 + EX28DRAFT_0999 0.85 -0.0
1,003,710 - EX28DRAFT_0999 0.85 +0.5
1,003,845 + +0.0
1,003,851 + +0.0
1,003,851 + +0.7
1,003,852 - -1.6
1,003,935 + -0.4
1,003,935 + +0.3
1,003,935 + +0.2
1,003,936 - -0.6
1,003,936 - -0.2
1,003,959 - -0.4
1,003,995 - +0.2
1,004,061 - -1.3
1,004,474 + EX28DRAFT_1000 0.76 +0.3
1,004,476 + EX28DRAFT_1000 0.77 -1.9
1,004,477 - EX28DRAFT_1000 0.77 -2.0
1,004,477 - EX28DRAFT_1000 0.77 -0.2
1,004,572 + +0.3
1,004,637 - -0.5
1,004,641 + -0.2
1,004,641 + +0.2
1,004,641 + -1.0
1,004,642 - +0.3
1,004,642 - -0.4
1,004,700 + -0.5
1,004,700 + +1.0
1,004,713 - -0.3
1,004,781 + -0.2
1,004,791 - +0.9
1,004,936 - -0.7
1,004,948 - +0.1
1,004,974 + -0.2
1,004,974 + +0.6
1,005,011 + +1.0
1,005,185 + EX28DRAFT_1001 0.12 -0.6
1,005,186 - EX28DRAFT_1001 0.12 +1.9
1,005,309 - EX28DRAFT_1001 0.22 +0.4
1,005,375 + EX28DRAFT_1001 0.27 -0.5
1,005,378 - EX28DRAFT_1001 0.27 -0.3
1,005,378 - EX28DRAFT_1001 0.27 -0.5
1,005,441 - EX28DRAFT_1001 0.33 -0.2
1,005,511 - EX28DRAFT_1001 0.38 -0.0
1,005,592 + EX28DRAFT_1001 0.45 -1.3
1,005,593 - EX28DRAFT_1001 0.45 +1.7

Or see this region's nucleotide sequence