Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0975 and EX28DRAFT_0976 are separated by 166 nucleotides EX28DRAFT_0976 and EX28DRAFT_0977 are separated by 49 nucleotides EX28DRAFT_0977 and EX28DRAFT_0978 overlap by 1 nucleotides EX28DRAFT_0978 and EX28DRAFT_0979 are separated by 12 nucleotides EX28DRAFT_0979 and EX28DRAFT_0980 are separated by 197 nucleotides
EX28DRAFT_0975: EX28DRAFT_0975 - psp operon transcriptional activator PspF, at 977,465 to 978,442
_0975
EX28DRAFT_0976: EX28DRAFT_0976 - phage shock protein A (PspA) family protein, at 978,609 to 979,277
_0976
EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551
_0977
EX28DRAFT_0978: EX28DRAFT_0978 - phage shock protein C (PspC) family protein, at 979,551 to 979,910
_0978
EX28DRAFT_0979: EX28DRAFT_0979 - phage shock protein PspD, at 979,923 to 980,147
_0979
EX28DRAFT_0980: EX28DRAFT_0980 - Glycosidases, at 980,345 to 982,042
_0980
Position (kb) 979
980 Strain fitness (log2 ratio) -1
0
1 at 978.595 kb on - strand at 978.743 kb on + strand, within EX28DRAFT_0976 at 978.854 kb on + strand, within EX28DRAFT_0976 at 979.130 kb on + strand, within EX28DRAFT_0976 at 979.278 kb on + strand at 979.278 kb on + strand at 979.310 kb on + strand at 979.310 kb on + strand at 979.311 kb on - strand at 979.322 kb on + strand at 979.402 kb on + strand, within EX28DRAFT_0977 at 979.704 kb on - strand, within EX28DRAFT_0978 at 979.719 kb on + strand, within EX28DRAFT_0978 at 979.719 kb on + strand, within EX28DRAFT_0978 at 979.719 kb on + strand, within EX28DRAFT_0978 at 979.720 kb on - strand, within EX28DRAFT_0978 at 979.720 kb on - strand, within EX28DRAFT_0978 at 979.720 kb on - strand, within EX28DRAFT_0978 at 979.861 kb on - strand, within EX28DRAFT_0978 at 979.909 kb on - strand at 979.957 kb on + strand, within EX28DRAFT_0979 at 980.134 kb on - strand at 980.137 kb on + strand at 980.516 kb on + strand, within EX28DRAFT_0980
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 978,595 - +0.1 978,743 + EX28DRAFT_0976 0.20 -0.6 978,854 + EX28DRAFT_0976 0.37 -0.6 979,130 + EX28DRAFT_0976 0.78 -0.0 979,278 + +0.2 979,278 + -0.3 979,310 + -0.6 979,310 + +1.7 979,311 - +0.2 979,322 + +1.1 979,402 + EX28DRAFT_0977 0.33 -1.0 979,704 - EX28DRAFT_0978 0.42 -0.4 979,719 + EX28DRAFT_0978 0.47 +1.3 979,719 + EX28DRAFT_0978 0.47 +0.2 979,719 + EX28DRAFT_0978 0.47 -0.4 979,720 - EX28DRAFT_0978 0.47 +0.7 979,720 - EX28DRAFT_0978 0.47 -0.6 979,720 - EX28DRAFT_0978 0.47 -0.1 979,861 - EX28DRAFT_0978 0.86 -0.5 979,909 - +0.6 979,957 + EX28DRAFT_0979 0.15 +0.1 980,134 - +0.1 980,137 + -1.5 980,516 + EX28DRAFT_0980 0.10 +0.3
Or see this region's nucleotide sequence