Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0969 and EX28DRAFT_0970 are separated by 162 nucleotides EX28DRAFT_0970 and EX28DRAFT_0971 are separated by 1 nucleotides EX28DRAFT_0971 and EX28DRAFT_0972 overlap by 1 nucleotides
EX28DRAFT_0969: EX28DRAFT_0969 - TupA-like ATPgrasp, at 970,993 to 971,934
_0969
EX28DRAFT_0970: EX28DRAFT_0970 - ABC-type antimicrobial peptide transport system, ATPase component, at 972,097 to 972,903
_0970
EX28DRAFT_0971: EX28DRAFT_0971 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 972,905 to 973,897
_0971
EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787
_0972
Position (kb) 972
973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 971.125 kb on + strand, within EX28DRAFT_0969 at 971.138 kb on + strand, within EX28DRAFT_0969 at 971.160 kb on + strand, within EX28DRAFT_0969 at 971.160 kb on + strand, within EX28DRAFT_0969 at 971.161 kb on - strand, within EX28DRAFT_0969 at 971.284 kb on + strand, within EX28DRAFT_0969 at 971.284 kb on + strand, within EX28DRAFT_0969 at 971.285 kb on - strand, within EX28DRAFT_0969 at 971.285 kb on - strand, within EX28DRAFT_0969 at 971.304 kb on - strand, within EX28DRAFT_0969 at 971.350 kb on + strand, within EX28DRAFT_0969 at 971.350 kb on + strand, within EX28DRAFT_0969 at 971.350 kb on + strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.355 kb on - strand, within EX28DRAFT_0969 at 971.435 kb on + strand, within EX28DRAFT_0969 at 971.436 kb on - strand, within EX28DRAFT_0969 at 971.449 kb on + strand, within EX28DRAFT_0969 at 971.450 kb on - strand, within EX28DRAFT_0969 at 971.450 kb on - strand, within EX28DRAFT_0969 at 971.450 kb on - strand, within EX28DRAFT_0969 at 971.460 kb on + strand, within EX28DRAFT_0969 at 971.566 kb on - strand, within EX28DRAFT_0969 at 971.569 kb on + strand, within EX28DRAFT_0969 at 971.569 kb on + strand, within EX28DRAFT_0969 at 971.572 kb on + strand, within EX28DRAFT_0969 at 971.665 kb on + strand, within EX28DRAFT_0969 at 971.748 kb on + strand, within EX28DRAFT_0969 at 971.777 kb on - strand, within EX28DRAFT_0969 at 971.842 kb on + strand at 972.025 kb on - strand at 972.288 kb on - strand, within EX28DRAFT_0970 at 972.498 kb on + strand, within EX28DRAFT_0970 at 972.798 kb on + strand, within EX28DRAFT_0970
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 971,125 + EX28DRAFT_0969 0.14 +0.3 971,138 + EX28DRAFT_0969 0.15 -0.0 971,160 + EX28DRAFT_0969 0.18 -0.3 971,160 + EX28DRAFT_0969 0.18 +1.7 971,161 - EX28DRAFT_0969 0.18 +0.6 971,284 + EX28DRAFT_0969 0.31 +0.2 971,284 + EX28DRAFT_0969 0.31 -0.6 971,285 - EX28DRAFT_0969 0.31 -0.1 971,285 - EX28DRAFT_0969 0.31 -0.8 971,304 - EX28DRAFT_0969 0.33 +0.1 971,350 + EX28DRAFT_0969 0.38 -2.2 971,350 + EX28DRAFT_0969 0.38 -0.4 971,350 + EX28DRAFT_0969 0.38 +0.0 971,351 - EX28DRAFT_0969 0.38 -0.0 971,351 - EX28DRAFT_0969 0.38 -0.9 971,351 - EX28DRAFT_0969 0.38 -0.6 971,351 - EX28DRAFT_0969 0.38 +0.3 971,355 - EX28DRAFT_0969 0.38 -0.0 971,435 + EX28DRAFT_0969 0.47 +0.2 971,436 - EX28DRAFT_0969 0.47 -0.5 971,449 + EX28DRAFT_0969 0.48 +0.4 971,450 - EX28DRAFT_0969 0.49 -0.5 971,450 - EX28DRAFT_0969 0.49 -0.0 971,450 - EX28DRAFT_0969 0.49 -0.3 971,460 + EX28DRAFT_0969 0.50 +0.3 971,566 - EX28DRAFT_0969 0.61 -3.6 971,569 + EX28DRAFT_0969 0.61 -0.0 971,569 + EX28DRAFT_0969 0.61 -1.3 971,572 + EX28DRAFT_0969 0.61 +0.2 971,665 + EX28DRAFT_0969 0.71 -0.4 971,748 + EX28DRAFT_0969 0.80 -0.6 971,777 - EX28DRAFT_0969 0.83 -3.8 971,842 + +1.0 972,025 - -1.3 972,288 - EX28DRAFT_0970 0.24 -0.3 972,498 + EX28DRAFT_0970 0.50 -2.3 972,798 + EX28DRAFT_0970 0.87 -1.1
Or see this region's nucleotide sequence