Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0357

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0356 and EX28DRAFT_0357 are separated by 135 nucleotidesEX28DRAFT_0357 and EX28DRAFT_0358 are separated by 90 nucleotidesEX28DRAFT_0358 and EX28DRAFT_0359 are separated by 16 nucleotides EX28DRAFT_0356: EX28DRAFT_0356 - DNA gyrase, A subunit, at 321,356 to 323,992 _0356 EX28DRAFT_0357: EX28DRAFT_0357 - Signal transduction histidine kinase, at 324,128 to 326,974 _0357 EX28DRAFT_0358: EX28DRAFT_0358 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 327,065 to 327,715 _0358 EX28DRAFT_0359: EX28DRAFT_0359 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain, at 327,732 to 330,404 _0359 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 323.990 kb on + strandat 324.050 kb on - strandat 324.050 kb on - strandat 324.076 kb on + strandat 324.234 kb on - strandat 324.289 kb on - strandat 324.311 kb on + strandat 324.351 kb on - strandat 324.463 kb on + strand, within EX28DRAFT_0357at 324.475 kb on + strand, within EX28DRAFT_0357at 324.475 kb on + strand, within EX28DRAFT_0357at 324.475 kb on + strand, within EX28DRAFT_0357at 324.476 kb on - strand, within EX28DRAFT_0357at 324.511 kb on + strand, within EX28DRAFT_0357at 324.512 kb on - strand, within EX28DRAFT_0357at 324.546 kb on - strand, within EX28DRAFT_0357at 324.658 kb on + strand, within EX28DRAFT_0357at 324.659 kb on - strand, within EX28DRAFT_0357at 324.659 kb on - strand, within EX28DRAFT_0357at 324.668 kb on + strand, within EX28DRAFT_0357at 324.669 kb on - strand, within EX28DRAFT_0357at 324.750 kb on - strand, within EX28DRAFT_0357at 324.750 kb on - strand, within EX28DRAFT_0357at 324.965 kb on - strand, within EX28DRAFT_0357at 324.965 kb on - strand, within EX28DRAFT_0357at 325.022 kb on - strand, within EX28DRAFT_0357at 325.045 kb on + strand, within EX28DRAFT_0357at 325.131 kb on + strand, within EX28DRAFT_0357at 325.132 kb on + strand, within EX28DRAFT_0357at 325.132 kb on + strand, within EX28DRAFT_0357at 325.133 kb on - strand, within EX28DRAFT_0357at 325.133 kb on - strand, within EX28DRAFT_0357at 325.133 kb on - strand, within EX28DRAFT_0357at 325.136 kb on + strand, within EX28DRAFT_0357at 325.137 kb on - strand, within EX28DRAFT_0357at 325.153 kb on + strand, within EX28DRAFT_0357at 325.291 kb on + strand, within EX28DRAFT_0357at 325.292 kb on - strand, within EX28DRAFT_0357at 325.292 kb on - strand, within EX28DRAFT_0357at 325.295 kb on + strand, within EX28DRAFT_0357at 325.295 kb on + strand, within EX28DRAFT_0357at 325.793 kb on + strand, within EX28DRAFT_0357at 325.793 kb on + strand, within EX28DRAFT_0357at 325.794 kb on - strand, within EX28DRAFT_0357at 325.794 kb on - strand, within EX28DRAFT_0357at 325.942 kb on + strand, within EX28DRAFT_0357at 325.943 kb on - strand, within EX28DRAFT_0357at 326.188 kb on + strand, within EX28DRAFT_0357at 326.189 kb on - strand, within EX28DRAFT_0357at 326.288 kb on + strand, within EX28DRAFT_0357at 326.333 kb on + strand, within EX28DRAFT_0357at 326.472 kb on + strand, within EX28DRAFT_0357at 326.522 kb on + strand, within EX28DRAFT_0357at 326.523 kb on - strand, within EX28DRAFT_0357at 326.599 kb on + strand, within EX28DRAFT_0357at 327.105 kb on + strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.179 kb on - strand, within EX28DRAFT_0358at 327.493 kb on + strand, within EX28DRAFT_0358at 327.493 kb on + strand, within EX28DRAFT_0358at 327.494 kb on - strand, within EX28DRAFT_0358at 327.494 kb on - strand, within EX28DRAFT_0358at 327.499 kb on - strand, within EX28DRAFT_0358at 327.499 kb on - strand, within EX28DRAFT_0358at 327.525 kb on + strand, within EX28DRAFT_0358at 327.525 kb on + strand, within EX28DRAFT_0358at 327.526 kb on - strand, within EX28DRAFT_0358at 327.526 kb on - strand, within EX28DRAFT_0358at 327.601 kb on + strand, within EX28DRAFT_0358at 327.602 kb on - strand, within EX28DRAFT_0358at 327.624 kb on - strand, within EX28DRAFT_0358at 327.672 kb on - strandat 327.698 kb on + strandat 327.698 kb on + strandat 327.698 kb on + strandat 327.717 kb on + strandat 327.717 kb on + strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.720 kb on - strandat 327.720 kb on - strandat 327.734 kb on - strandat 327.752 kb on - strandat 327.772 kb on + strandat 327.772 kb on + strandat 327.807 kb on + strandat 327.808 kb on - strandat 327.829 kb on - strandat 327.852 kb on - strandat 327.928 kb on + strandat 327.928 kb on + strandat 327.928 kb on + strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.939 kb on - strandat 327.952 kb on - strandat 327.956 kb on + strandat 327.973 kb on + strandat 327.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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323,990 + -0.2
324,050 - -0.1
324,050 - -0.1
324,076 + -0.4
324,234 - +0.3
324,289 - -1.0
324,311 + +0.3
324,351 - -0.1
324,463 + EX28DRAFT_0357 0.12 -1.2
324,475 + EX28DRAFT_0357 0.12 -0.2
324,475 + EX28DRAFT_0357 0.12 -0.0
324,475 + EX28DRAFT_0357 0.12 +0.4
324,476 - EX28DRAFT_0357 0.12 -0.1
324,511 + EX28DRAFT_0357 0.13 +0.3
324,512 - EX28DRAFT_0357 0.13 +0.4
324,546 - EX28DRAFT_0357 0.15 +0.1
324,658 + EX28DRAFT_0357 0.19 +0.6
324,659 - EX28DRAFT_0357 0.19 +0.2
324,659 - EX28DRAFT_0357 0.19 -0.1
324,668 + EX28DRAFT_0357 0.19 -2.3
324,669 - EX28DRAFT_0357 0.19 -0.4
324,750 - EX28DRAFT_0357 0.22 +0.5
324,750 - EX28DRAFT_0357 0.22 +0.0
324,965 - EX28DRAFT_0357 0.29 +0.3
324,965 - EX28DRAFT_0357 0.29 -0.4
325,022 - EX28DRAFT_0357 0.31 +0.7
325,045 + EX28DRAFT_0357 0.32 +0.2
325,131 + EX28DRAFT_0357 0.35 +0.5
325,132 + EX28DRAFT_0357 0.35 -0.5
325,132 + EX28DRAFT_0357 0.35 +0.1
325,133 - EX28DRAFT_0357 0.35 +0.2
325,133 - EX28DRAFT_0357 0.35 -0.2
325,133 - EX28DRAFT_0357 0.35 -0.1
325,136 + EX28DRAFT_0357 0.35 +0.4
325,137 - EX28DRAFT_0357 0.35 +0.4
325,153 + EX28DRAFT_0357 0.36 -0.0
325,291 + EX28DRAFT_0357 0.41 -0.3
325,292 - EX28DRAFT_0357 0.41 +0.0
325,292 - EX28DRAFT_0357 0.41 +1.0
325,295 + EX28DRAFT_0357 0.41 +1.5
325,295 + EX28DRAFT_0357 0.41 -0.1
325,793 + EX28DRAFT_0357 0.58 -0.4
325,793 + EX28DRAFT_0357 0.58 +0.2
325,794 - EX28DRAFT_0357 0.59 +0.0
325,794 - EX28DRAFT_0357 0.59 +0.1
325,942 + EX28DRAFT_0357 0.64 -0.4
325,943 - EX28DRAFT_0357 0.64 -0.5
326,188 + EX28DRAFT_0357 0.72 -0.2
326,189 - EX28DRAFT_0357 0.72 +0.2
326,288 + EX28DRAFT_0357 0.76 -1.0
326,333 + EX28DRAFT_0357 0.77 +0.7
326,472 + EX28DRAFT_0357 0.82 +0.9
326,522 + EX28DRAFT_0357 0.84 +0.8
326,523 - EX28DRAFT_0357 0.84 +1.3
326,599 + EX28DRAFT_0357 0.87 +0.2
327,105 + +0.4
327,106 - +1.0
327,106 - +0.0
327,106 - -0.7
327,106 - +0.6
327,106 - -1.1
327,106 - +0.3
327,179 - EX28DRAFT_0358 0.18 -0.3
327,493 + EX28DRAFT_0358 0.66 +0.6
327,493 + EX28DRAFT_0358 0.66 +0.3
327,494 - EX28DRAFT_0358 0.66 +0.1
327,494 - EX28DRAFT_0358 0.66 -0.4
327,499 - EX28DRAFT_0358 0.67 -0.2
327,499 - EX28DRAFT_0358 0.67 +0.7
327,525 + EX28DRAFT_0358 0.71 -2.6
327,525 + EX28DRAFT_0358 0.71 +0.7
327,526 - EX28DRAFT_0358 0.71 -1.3
327,526 - EX28DRAFT_0358 0.71 +0.5
327,601 + EX28DRAFT_0358 0.82 -1.7
327,602 - EX28DRAFT_0358 0.82 +1.9
327,624 - EX28DRAFT_0358 0.86 -0.7
327,672 - +0.0
327,698 + +0.2
327,698 + +0.0
327,698 + +0.4
327,717 + +0.2
327,717 + +0.6
327,718 - +0.1
327,718 - -0.8
327,718 - +0.6
327,718 - +0.2
327,718 - +0.6
327,720 - +0.4
327,720 - +0.8
327,734 - -0.0
327,752 - +0.9
327,772 + +2.0
327,772 + +0.0
327,807 + +0.3
327,808 - +0.3
327,829 - +0.6
327,852 - +0.5
327,928 + -0.4
327,928 + +0.9
327,928 + -0.5
327,929 - -0.4
327,929 - +0.0
327,929 - +0.3
327,929 - -0.2
327,929 - -0.6
327,939 - -0.0
327,952 - +0.2
327,956 + +0.2
327,973 + +0.0
327,973 + -0.0

Or see this region's nucleotide sequence