Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0244 and EX28DRAFT_0245 overlap by 4 nucleotides EX28DRAFT_0245 and EX28DRAFT_0246 overlap by 4 nucleotides
EX28DRAFT_0244: EX28DRAFT_0244 - type VI secretion protein, VC_A0114 family, at 198,628 to 199,968
_0244
EX28DRAFT_0245: EX28DRAFT_0245 - type IV / VI secretion system protein, DotU family, at 199,965 to 200,654
_0245
EX28DRAFT_0246: EX28DRAFT_0246 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 200,651 to 202,357
_0246
Position (kb) 199
200
201 Strain fitness (log2 ratio) -1
0
1
2 at 199.030 kb on + strand, within EX28DRAFT_0244 at 199.152 kb on + strand, within EX28DRAFT_0244 at 199.152 kb on + strand, within EX28DRAFT_0244 at 199.153 kb on - strand, within EX28DRAFT_0244 at 199.153 kb on - strand, within EX28DRAFT_0244 at 199.164 kb on - strand, within EX28DRAFT_0244 at 199.325 kb on + strand, within EX28DRAFT_0244 at 199.326 kb on - strand, within EX28DRAFT_0244 at 199.326 kb on - strand, within EX28DRAFT_0244 at 199.485 kb on - strand, within EX28DRAFT_0244 at 199.598 kb on - strand, within EX28DRAFT_0244 at 199.663 kb on + strand, within EX28DRAFT_0244 at 199.728 kb on + strand, within EX28DRAFT_0244 at 199.729 kb on - strand, within EX28DRAFT_0244 at 199.808 kb on + strand, within EX28DRAFT_0244 at 199.809 kb on - strand, within EX28DRAFT_0244 at 199.977 kb on - strand at 200.003 kb on + strand at 200.024 kb on + strand at 200.024 kb on + strand at 200.025 kb on - strand at 200.025 kb on - strand at 200.377 kb on + strand, within EX28DRAFT_0245 at 200.555 kb on + strand, within EX28DRAFT_0245 at 200.556 kb on - strand, within EX28DRAFT_0245 at 200.646 kb on - strand at 200.647 kb on + strand at 200.648 kb on - strand at 200.793 kb on - strand at 200.793 kb on - strand at 200.858 kb on + strand, within EX28DRAFT_0246 at 200.859 kb on - strand, within EX28DRAFT_0246 at 200.859 kb on - strand, within EX28DRAFT_0246 at 200.922 kb on + strand, within EX28DRAFT_0246 at 200.922 kb on + strand, within EX28DRAFT_0246 at 200.923 kb on - strand, within EX28DRAFT_0246 at 200.994 kb on + strand, within EX28DRAFT_0246
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 199,030 + EX28DRAFT_0244 0.30 +0.3 199,152 + EX28DRAFT_0244 0.39 +0.2 199,152 + EX28DRAFT_0244 0.39 +0.2 199,153 - EX28DRAFT_0244 0.39 +0.0 199,153 - EX28DRAFT_0244 0.39 +0.1 199,164 - EX28DRAFT_0244 0.40 +0.1 199,325 + EX28DRAFT_0244 0.52 +0.1 199,326 - EX28DRAFT_0244 0.52 +0.1 199,326 - EX28DRAFT_0244 0.52 +0.2 199,485 - EX28DRAFT_0244 0.64 +0.1 199,598 - EX28DRAFT_0244 0.72 +0.1 199,663 + EX28DRAFT_0244 0.77 +1.3 199,728 + EX28DRAFT_0244 0.82 +2.0 199,729 - EX28DRAFT_0244 0.82 +1.7 199,808 + EX28DRAFT_0244 0.88 -1.0 199,809 - EX28DRAFT_0244 0.88 +0.6 199,977 - -0.1 200,003 + +0.1 200,024 + +0.5 200,024 + +0.3 200,025 - +1.1 200,025 - +1.1 200,377 + EX28DRAFT_0245 0.60 -0.3 200,555 + EX28DRAFT_0245 0.86 -0.8 200,556 - EX28DRAFT_0245 0.86 -0.5 200,646 - -0.4 200,647 + +1.2 200,648 - +0.6 200,793 - +1.7 200,793 - -0.5 200,858 + EX28DRAFT_0246 0.12 -0.1 200,859 - EX28DRAFT_0246 0.12 -0.8 200,859 - EX28DRAFT_0246 0.12 +1.1 200,922 + EX28DRAFT_0246 0.16 -0.9 200,922 + EX28DRAFT_0246 0.16 -0.2 200,923 - EX28DRAFT_0246 0.16 +0.1 200,994 + EX28DRAFT_0246 0.20 +0.1
Or see this region's nucleotide sequence