Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0243

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0242 and EX28DRAFT_0243 are separated by 38 nucleotidesEX28DRAFT_0243 and EX28DRAFT_0244 are separated by 17 nucleotides EX28DRAFT_0242: EX28DRAFT_0242 - type VI secretion protein, VC_A0107 family, at 196,536 to 197,033 _0242 EX28DRAFT_0243: EX28DRAFT_0243 - type VI secretion protein, EvpB/VC_A0108 family, at 197,072 to 198,610 _0243 EX28DRAFT_0244: EX28DRAFT_0244 - type VI secretion protein, VC_A0114 family, at 198,628 to 199,968 _0244 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.445 kb on + strandat 196.595 kb on - strand, within EX28DRAFT_0242at 196.806 kb on - strand, within EX28DRAFT_0242at 196.919 kb on + strand, within EX28DRAFT_0242at 197.079 kb on + strandat 197.080 kb on - strandat 197.141 kb on + strandat 197.142 kb on - strandat 197.196 kb on + strandat 197.446 kb on + strand, within EX28DRAFT_0243at 197.488 kb on + strand, within EX28DRAFT_0243at 197.489 kb on - strand, within EX28DRAFT_0243at 197.565 kb on - strand, within EX28DRAFT_0243at 197.565 kb on - strand, within EX28DRAFT_0243at 197.565 kb on - strand, within EX28DRAFT_0243at 197.565 kb on - strand, within EX28DRAFT_0243at 197.577 kb on - strand, within EX28DRAFT_0243at 197.577 kb on - strand, within EX28DRAFT_0243at 197.581 kb on + strand, within EX28DRAFT_0243at 197.692 kb on + strand, within EX28DRAFT_0243at 197.692 kb on + strand, within EX28DRAFT_0243at 197.692 kb on + strand, within EX28DRAFT_0243at 197.693 kb on - strand, within EX28DRAFT_0243at 197.693 kb on - strand, within EX28DRAFT_0243at 197.767 kb on + strand, within EX28DRAFT_0243at 197.768 kb on - strand, within EX28DRAFT_0243at 197.768 kb on - strand, within EX28DRAFT_0243at 197.778 kb on - strand, within EX28DRAFT_0243at 197.778 kb on - strand, within EX28DRAFT_0243at 197.778 kb on - strand, within EX28DRAFT_0243at 197.796 kb on - strand, within EX28DRAFT_0243at 197.837 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.916 kb on - strand, within EX28DRAFT_0243at 197.916 kb on - strand, within EX28DRAFT_0243at 197.916 kb on - strand, within EX28DRAFT_0243at 197.952 kb on - strand, within EX28DRAFT_0243at 197.952 kb on - strand, within EX28DRAFT_0243at 197.962 kb on + strand, within EX28DRAFT_0243at 197.962 kb on + strand, within EX28DRAFT_0243at 197.963 kb on - strand, within EX28DRAFT_0243at 197.998 kb on + strand, within EX28DRAFT_0243at 197.999 kb on - strand, within EX28DRAFT_0243at 198.070 kb on + strand, within EX28DRAFT_0243at 198.071 kb on - strand, within EX28DRAFT_0243at 198.080 kb on + strand, within EX28DRAFT_0243at 198.183 kb on - strand, within EX28DRAFT_0243at 198.245 kb on + strand, within EX28DRAFT_0243at 198.246 kb on - strand, within EX28DRAFT_0243at 198.246 kb on - strand, within EX28DRAFT_0243at 198.296 kb on + strand, within EX28DRAFT_0243at 198.484 kb on - strandat 198.530 kb on + strandat 198.701 kb on - strandat 198.852 kb on + strand, within EX28DRAFT_0244at 198.852 kb on + strand, within EX28DRAFT_0244at 198.853 kb on - strand, within EX28DRAFT_0244at 198.920 kb on + strand, within EX28DRAFT_0244at 198.921 kb on - strand, within EX28DRAFT_0244at 199.030 kb on + strand, within EX28DRAFT_0244at 199.152 kb on + strand, within EX28DRAFT_0244at 199.152 kb on + strand, within EX28DRAFT_0244at 199.153 kb on - strand, within EX28DRAFT_0244at 199.153 kb on - strand, within EX28DRAFT_0244at 199.164 kb on - strand, within EX28DRAFT_0244at 199.325 kb on + strand, within EX28DRAFT_0244at 199.326 kb on - strand, within EX28DRAFT_0244at 199.326 kb on - strand, within EX28DRAFT_0244at 199.485 kb on - strand, within EX28DRAFT_0244at 199.598 kb on - strand, within EX28DRAFT_0244

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
196,445 + -0.0
196,595 - EX28DRAFT_0242 0.12 +0.1
196,806 - EX28DRAFT_0242 0.54 -0.6
196,919 + EX28DRAFT_0242 0.77 -0.3
197,079 + -0.4
197,080 - +0.8
197,141 + -0.5
197,142 - -0.2
197,196 + -0.6
197,446 + EX28DRAFT_0243 0.24 +0.8
197,488 + EX28DRAFT_0243 0.27 +0.2
197,489 - EX28DRAFT_0243 0.27 +0.9
197,565 - EX28DRAFT_0243 0.32 -0.3
197,565 - EX28DRAFT_0243 0.32 -0.9
197,565 - EX28DRAFT_0243 0.32 -0.2
197,565 - EX28DRAFT_0243 0.32 +1.4
197,577 - EX28DRAFT_0243 0.33 +0.4
197,577 - EX28DRAFT_0243 0.33 +0.2
197,581 + EX28DRAFT_0243 0.33 +0.2
197,692 + EX28DRAFT_0243 0.40 -1.4
197,692 + EX28DRAFT_0243 0.40 +0.9
197,692 + EX28DRAFT_0243 0.40 -0.9
197,693 - EX28DRAFT_0243 0.40 -0.2
197,693 - EX28DRAFT_0243 0.40 +1.9
197,767 + EX28DRAFT_0243 0.45 -0.5
197,768 - EX28DRAFT_0243 0.45 -0.7
197,768 - EX28DRAFT_0243 0.45 +0.0
197,778 - EX28DRAFT_0243 0.46 -0.1
197,778 - EX28DRAFT_0243 0.46 +0.4
197,778 - EX28DRAFT_0243 0.46 +0.5
197,796 - EX28DRAFT_0243 0.47 -0.1
197,837 + EX28DRAFT_0243 0.50 -1.0
197,915 + EX28DRAFT_0243 0.55 -2.2
197,915 + EX28DRAFT_0243 0.55 +0.5
197,915 + EX28DRAFT_0243 0.55 -0.2
197,915 + EX28DRAFT_0243 0.55 +0.5
197,916 - EX28DRAFT_0243 0.55 +0.0
197,916 - EX28DRAFT_0243 0.55 +0.3
197,916 - EX28DRAFT_0243 0.55 +0.0
197,952 - EX28DRAFT_0243 0.57 -0.1
197,952 - EX28DRAFT_0243 0.57 +0.4
197,962 + EX28DRAFT_0243 0.58 -0.7
197,962 + EX28DRAFT_0243 0.58 +1.3
197,963 - EX28DRAFT_0243 0.58 -0.2
197,998 + EX28DRAFT_0243 0.60 -0.0
197,999 - EX28DRAFT_0243 0.60 -0.1
198,070 + EX28DRAFT_0243 0.65 -0.1
198,071 - EX28DRAFT_0243 0.65 +0.8
198,080 + EX28DRAFT_0243 0.65 +0.1
198,183 - EX28DRAFT_0243 0.72 -0.3
198,245 + EX28DRAFT_0243 0.76 -0.0
198,246 - EX28DRAFT_0243 0.76 +0.8
198,246 - EX28DRAFT_0243 0.76 +0.9
198,296 + EX28DRAFT_0243 0.80 +0.8
198,484 - +0.9
198,530 + -1.5
198,701 - -0.0
198,852 + EX28DRAFT_0244 0.17 -1.2
198,852 + EX28DRAFT_0244 0.17 +0.7
198,853 - EX28DRAFT_0244 0.17 +1.0
198,920 + EX28DRAFT_0244 0.22 +0.4
198,921 - EX28DRAFT_0244 0.22 -0.5
199,030 + EX28DRAFT_0244 0.30 +0.3
199,152 + EX28DRAFT_0244 0.39 +0.2
199,152 + EX28DRAFT_0244 0.39 +0.2
199,153 - EX28DRAFT_0244 0.39 +0.0
199,153 - EX28DRAFT_0244 0.39 +0.1
199,164 - EX28DRAFT_0244 0.40 +0.1
199,325 + EX28DRAFT_0244 0.52 +0.1
199,326 - EX28DRAFT_0244 0.52 +0.1
199,326 - EX28DRAFT_0244 0.52 +0.2
199,485 - EX28DRAFT_0244 0.64 +0.1
199,598 - EX28DRAFT_0244 0.72 +0.1

Or see this region's nucleotide sequence