Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21270

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21265 and CA264_21270 are separated by 4 nucleotidesCA264_21270 and CA264_21275 are separated by 27 nucleotidesCA264_21275 and CA264_21280 are separated by 38 nucleotides CA264_21265: CA264_21265 - hypothetical protein, at 119,026 to 120,348 _21265 CA264_21270: CA264_21270 - hypothetical protein, at 120,353 to 122,167 _21270 CA264_21275: CA264_21275 - hypothetical protein, at 122,195 to 122,824 _21275 CA264_21280: CA264_21280 - hypothetical protein, at 122,863 to 123,234 _21280 Position (kb) 120 121 122 123Strain fitness (log2 ratio) -1 0 1 2 3at 119.471 kb on - strand, within CA264_21265at 119.471 kb on - strand, within CA264_21265at 119.483 kb on - strand, within CA264_21265at 119.486 kb on - strand, within CA264_21265at 119.560 kb on + strand, within CA264_21265at 119.624 kb on + strand, within CA264_21265at 119.625 kb on - strand, within CA264_21265at 119.625 kb on - strand, within CA264_21265at 119.636 kb on + strand, within CA264_21265at 119.878 kb on - strand, within CA264_21265at 119.883 kb on - strand, within CA264_21265at 119.893 kb on + strand, within CA264_21265at 119.894 kb on - strand, within CA264_21265at 119.998 kb on + strand, within CA264_21265at 120.311 kb on - strandat 120.346 kb on + strandat 120.346 kb on + strandat 120.607 kb on - strand, within CA264_21270at 120.657 kb on + strand, within CA264_21270at 120.673 kb on + strand, within CA264_21270at 120.674 kb on - strand, within CA264_21270at 120.685 kb on - strand, within CA264_21270at 120.686 kb on + strand, within CA264_21270at 120.687 kb on - strand, within CA264_21270at 120.703 kb on - strand, within CA264_21270at 120.703 kb on - strand, within CA264_21270at 120.732 kb on + strand, within CA264_21270at 120.733 kb on - strand, within CA264_21270at 120.733 kb on - strand, within CA264_21270at 120.755 kb on - strand, within CA264_21270at 120.818 kb on - strand, within CA264_21270at 120.818 kb on - strand, within CA264_21270at 120.820 kb on - strand, within CA264_21270at 120.820 kb on - strand, within CA264_21270at 120.820 kb on - strand, within CA264_21270at 120.820 kb on - strand, within CA264_21270at 120.822 kb on - strand, within CA264_21270at 120.987 kb on + strand, within CA264_21270at 120.988 kb on - strand, within CA264_21270at 120.995 kb on + strand, within CA264_21270at 121.047 kb on - strand, within CA264_21270at 121.047 kb on - strand, within CA264_21270at 121.047 kb on - strand, within CA264_21270at 121.047 kb on - strand, within CA264_21270at 121.051 kb on - strand, within CA264_21270at 121.116 kb on - strand, within CA264_21270at 121.155 kb on + strand, within CA264_21270at 121.205 kb on - strand, within CA264_21270at 121.235 kb on - strand, within CA264_21270at 121.294 kb on + strand, within CA264_21270at 121.295 kb on - strand, within CA264_21270at 121.427 kb on - strand, within CA264_21270at 121.452 kb on + strand, within CA264_21270at 121.453 kb on - strand, within CA264_21270at 121.472 kb on - strand, within CA264_21270at 121.476 kb on - strand, within CA264_21270at 121.476 kb on - strand, within CA264_21270at 121.480 kb on - strand, within CA264_21270at 121.480 kb on - strand, within CA264_21270at 121.537 kb on - strand, within CA264_21270at 121.744 kb on - strand, within CA264_21270at 121.763 kb on + strand, within CA264_21270at 121.818 kb on - strand, within CA264_21270at 122.132 kb on - strandat 122.267 kb on - strand, within CA264_21275at 122.453 kb on + strand, within CA264_21275at 122.454 kb on - strand, within CA264_21275at 122.464 kb on - strand, within CA264_21275at 122.822 kb on + strandat 122.852 kb on - strandat 122.879 kb on + strandat 122.892 kb on + strandat 122.938 kb on - strand, within CA264_21280at 122.938 kb on - strand, within CA264_21280at 122.958 kb on - strand, within CA264_21280at 123.100 kb on + strand, within CA264_21280at 123.163 kb on - strand, within CA264_21280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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119,471 - CA264_21265 0.34 +0.2
119,471 - CA264_21265 0.34 +1.6
119,483 - CA264_21265 0.35 +0.1
119,486 - CA264_21265 0.35 +1.2
119,560 + CA264_21265 0.40 -0.9
119,624 + CA264_21265 0.45 +1.5
119,625 - CA264_21265 0.45 +1.1
119,625 - CA264_21265 0.45 +0.7
119,636 + CA264_21265 0.46 -1.4
119,878 - CA264_21265 0.64 -0.4
119,883 - CA264_21265 0.65 +0.2
119,893 + CA264_21265 0.66 +0.8
119,894 - CA264_21265 0.66 +0.6
119,998 + CA264_21265 0.73 +1.0
120,311 - +3.6
120,346 + +0.9
120,346 + +0.7
120,607 - CA264_21270 0.14 +1.2
120,657 + CA264_21270 0.17 +0.7
120,673 + CA264_21270 0.18 -0.2
120,674 - CA264_21270 0.18 -0.7
120,685 - CA264_21270 0.18 +0.2
120,686 + CA264_21270 0.18 +0.2
120,687 - CA264_21270 0.18 +1.1
120,703 - CA264_21270 0.19 +1.2
120,703 - CA264_21270 0.19 +0.8
120,732 + CA264_21270 0.21 -0.7
120,733 - CA264_21270 0.21 +0.2
120,733 - CA264_21270 0.21 +0.7
120,755 - CA264_21270 0.22 +0.9
120,818 - CA264_21270 0.26 +0.8
120,818 - CA264_21270 0.26 +0.2
120,820 - CA264_21270 0.26 +0.5
120,820 - CA264_21270 0.26 +0.7
120,820 - CA264_21270 0.26 +1.2
120,820 - CA264_21270 0.26 -0.4
120,822 - CA264_21270 0.26 +0.6
120,987 + CA264_21270 0.35 -1.4
120,988 - CA264_21270 0.35 +1.3
120,995 + CA264_21270 0.35 -1.0
121,047 - CA264_21270 0.38 +1.5
121,047 - CA264_21270 0.38 +1.5
121,047 - CA264_21270 0.38 +1.1
121,047 - CA264_21270 0.38 +0.7
121,051 - CA264_21270 0.38 +1.4
121,116 - CA264_21270 0.42 -0.5
121,155 + CA264_21270 0.44 -0.3
121,205 - CA264_21270 0.47 +0.9
121,235 - CA264_21270 0.49 -0.3
121,294 + CA264_21270 0.52 +0.3
121,295 - CA264_21270 0.52 -0.5
121,427 - CA264_21270 0.59 -0.9
121,452 + CA264_21270 0.61 +1.5
121,453 - CA264_21270 0.61 +1.9
121,472 - CA264_21270 0.62 +1.4
121,476 - CA264_21270 0.62 +0.1
121,476 - CA264_21270 0.62 +1.1
121,480 - CA264_21270 0.62 +0.5
121,480 - CA264_21270 0.62 +0.4
121,537 - CA264_21270 0.65 +1.2
121,744 - CA264_21270 0.77 +0.8
121,763 + CA264_21270 0.78 +0.0
121,818 - CA264_21270 0.81 +0.1
122,132 - +1.0
122,267 - CA264_21275 0.11 +2.0
122,453 + CA264_21275 0.41 -1.5
122,454 - CA264_21275 0.41 +2.4
122,464 - CA264_21275 0.43 +1.0
122,822 + -0.0
122,852 - -0.2
122,879 + -1.5
122,892 + +0.2
122,938 - CA264_21280 0.20 +0.8
122,938 - CA264_21280 0.20 +0.1
122,958 - CA264_21280 0.26 +0.8
123,100 + CA264_21280 0.64 -0.5
123,163 - CA264_21280 0.81 +1.3

Or see this region's nucleotide sequence