Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20435

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20425 and CA264_20430 are separated by 2 nucleotidesCA264_20430 and CA264_20435 are separated by 244 nucleotidesCA264_20435 and CA264_20440 are separated by 118 nucleotidesCA264_20440 and CA264_20445 are separated by 397 nucleotides CA264_20425: CA264_20425 - thiamine phosphate synthase, at 4,706,844 to 4,707,488 _20425 CA264_20430: CA264_20430 - hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 4,707,491 to 4,708,243 _20430 CA264_20435: CA264_20435 - phosphomethylpyrimidine synthase ThiC, at 4,708,488 to 4,710,350 _20435 CA264_20440: CA264_20440 - thiamine biosynthesis protein ThiS, at 4,710,469 to 4,710,672 _20440 CA264_20445: CA264_20445 - peptidase M24 family protein, at 4,711,070 to 4,712,359 _20445 Position (kb) 4708 4709 4710 4711Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4707.504 kb on + strandat 4707.504 kb on + strandat 4707.509 kb on + strandat 4707.509 kb on + strandat 4707.510 kb on - strandat 4707.520 kb on + strandat 4707.521 kb on - strandat 4707.596 kb on + strand, within CA264_20430at 4707.651 kb on - strand, within CA264_20430at 4707.689 kb on - strand, within CA264_20430at 4707.691 kb on - strand, within CA264_20430at 4707.691 kb on - strand, within CA264_20430at 4707.691 kb on - strand, within CA264_20430at 4707.693 kb on + strand, within CA264_20430at 4707.696 kb on - strand, within CA264_20430at 4707.700 kb on - strand, within CA264_20430at 4707.725 kb on - strand, within CA264_20430at 4707.737 kb on + strand, within CA264_20430at 4707.737 kb on + strand, within CA264_20430at 4707.761 kb on + strand, within CA264_20430at 4707.981 kb on - strand, within CA264_20430at 4708.024 kb on + strand, within CA264_20430at 4708.024 kb on + strand, within CA264_20430at 4708.025 kb on - strand, within CA264_20430at 4708.027 kb on - strand, within CA264_20430at 4708.027 kb on - strand, within CA264_20430at 4708.040 kb on + strand, within CA264_20430at 4708.041 kb on - strand, within CA264_20430at 4708.047 kb on - strand, within CA264_20430at 4708.058 kb on + strand, within CA264_20430at 4708.058 kb on + strand, within CA264_20430at 4708.058 kb on + strand, within CA264_20430at 4708.110 kb on + strand, within CA264_20430at 4708.111 kb on - strand, within CA264_20430at 4708.132 kb on + strand, within CA264_20430at 4708.133 kb on - strand, within CA264_20430at 4708.225 kb on - strandat 4708.257 kb on + strandat 4708.312 kb on + strandat 4708.312 kb on + strandat 4708.313 kb on - strandat 4708.366 kb on - strandat 4708.371 kb on - strandat 4708.395 kb on + strandat 4708.395 kb on + strandat 4708.395 kb on + strandat 4708.396 kb on - strandat 4708.396 kb on - strandat 4708.399 kb on + strandat 4708.399 kb on + strandat 4708.399 kb on + strandat 4708.399 kb on + strandat 4708.399 kb on + strandat 4708.399 kb on + strandat 4708.400 kb on - strandat 4708.400 kb on - strandat 4708.400 kb on - strandat 4708.403 kb on + strandat 4708.403 kb on + strandat 4708.403 kb on + strandat 4708.404 kb on - strandat 4708.419 kb on + strandat 4708.487 kb on - strandat 4708.487 kb on - strandat 4708.487 kb on - strandat 4708.490 kb on - strandat 4708.589 kb on - strandat 4708.706 kb on + strand, within CA264_20435at 4708.707 kb on - strand, within CA264_20435at 4708.784 kb on - strand, within CA264_20435at 4708.837 kb on + strand, within CA264_20435at 4708.838 kb on - strand, within CA264_20435at 4708.857 kb on + strand, within CA264_20435at 4708.858 kb on - strand, within CA264_20435at 4708.858 kb on - strand, within CA264_20435at 4708.899 kb on + strand, within CA264_20435at 4708.899 kb on + strand, within CA264_20435at 4708.900 kb on - strand, within CA264_20435at 4708.900 kb on - strand, within CA264_20435at 4708.903 kb on + strand, within CA264_20435at 4708.903 kb on + strand, within CA264_20435at 4708.903 kb on + strand, within CA264_20435at 4708.903 kb on + strand, within CA264_20435at 4708.904 kb on - strand, within CA264_20435at 4708.959 kb on - strand, within CA264_20435at 4708.992 kb on - strand, within CA264_20435at 4709.001 kb on + strand, within CA264_20435at 4709.001 kb on + strand, within CA264_20435at 4709.001 kb on + strand, within CA264_20435at 4709.001 kb on + strand, within CA264_20435at 4709.001 kb on + strand, within CA264_20435at 4709.006 kb on + strand, within CA264_20435at 4709.061 kb on - strand, within CA264_20435at 4709.073 kb on + strand, within CA264_20435at 4709.103 kb on + strand, within CA264_20435at 4709.104 kb on - strand, within CA264_20435at 4709.104 kb on - strand, within CA264_20435at 4709.104 kb on - strand, within CA264_20435at 4709.139 kb on + strand, within CA264_20435at 4709.368 kb on + strand, within CA264_20435at 4709.391 kb on + strand, within CA264_20435at 4709.574 kb on - strand, within CA264_20435at 4709.640 kb on + strand, within CA264_20435at 4709.643 kb on - strand, within CA264_20435at 4709.680 kb on - strand, within CA264_20435at 4709.739 kb on - strand, within CA264_20435at 4709.748 kb on - strand, within CA264_20435at 4709.767 kb on - strand, within CA264_20435at 4709.804 kb on + strand, within CA264_20435at 4709.804 kb on + strand, within CA264_20435at 4709.805 kb on - strand, within CA264_20435at 4709.915 kb on + strand, within CA264_20435at 4709.916 kb on - strand, within CA264_20435at 4709.930 kb on - strand, within CA264_20435at 4710.004 kb on - strand, within CA264_20435at 4710.004 kb on - strand, within CA264_20435at 4710.035 kb on - strand, within CA264_20435at 4710.163 kb on + strand, within CA264_20435at 4710.250 kb on - strandat 4710.250 kb on - strandat 4710.257 kb on + strandat 4710.257 kb on + strandat 4710.260 kb on + strandat 4710.260 kb on + strandat 4710.261 kb on - strandat 4710.261 kb on - strandat 4710.280 kb on + strandat 4710.420 kb on - strandat 4710.645 kb on + strand, within CA264_20440at 4710.646 kb on - strand, within CA264_20440at 4710.697 kb on + strandat 4710.751 kb on + strandat 4710.752 kb on - strandat 4710.752 kb on - strandat 4710.754 kb on - strandat 4710.792 kb on - strandat 4710.864 kb on - strandat 4710.885 kb on + strandat 4710.886 kb on - strandat 4710.931 kb on + strandat 4710.931 kb on + strandat 4710.951 kb on - strandat 4710.951 kb on - strandat 4711.022 kb on - strandat 4711.031 kb on + strandat 4711.031 kb on + strandat 4711.044 kb on + strandat 4711.045 kb on - strandat 4711.103 kb on - strandat 4711.135 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,707,504 + +1.9
4,707,504 + +2.1
4,707,509 + +0.9
4,707,509 + +1.8
4,707,510 - +0.9
4,707,520 + +1.1
4,707,521 - +1.7
4,707,596 + CA264_20430 0.14 +1.0
4,707,651 - CA264_20430 0.21 +1.4
4,707,689 - CA264_20430 0.26 +2.0
4,707,691 - CA264_20430 0.27 +1.6
4,707,691 - CA264_20430 0.27 -0.1
4,707,691 - CA264_20430 0.27 +1.3
4,707,693 + CA264_20430 0.27 +0.5
4,707,696 - CA264_20430 0.27 +0.8
4,707,700 - CA264_20430 0.28 +1.6
4,707,725 - CA264_20430 0.31 +1.4
4,707,737 + CA264_20430 0.33 -0.9
4,707,737 + CA264_20430 0.33 +1.3
4,707,761 + CA264_20430 0.36 +1.7
4,707,981 - CA264_20430 0.65 +1.8
4,708,024 + CA264_20430 0.71 +0.6
4,708,024 + CA264_20430 0.71 +0.5
4,708,025 - CA264_20430 0.71 +1.4
4,708,027 - CA264_20430 0.71 +2.4
4,708,027 - CA264_20430 0.71 +1.8
4,708,040 + CA264_20430 0.73 +0.9
4,708,041 - CA264_20430 0.73 +0.9
4,708,047 - CA264_20430 0.74 +2.2
4,708,058 + CA264_20430 0.75 +1.1
4,708,058 + CA264_20430 0.75 +1.0
4,708,058 + CA264_20430 0.75 +0.7
4,708,110 + CA264_20430 0.82 -1.3
4,708,111 - CA264_20430 0.82 +2.1
4,708,132 + CA264_20430 0.85 +0.1
4,708,133 - CA264_20430 0.85 +2.0
4,708,225 - +1.2
4,708,257 + +0.3
4,708,312 + +0.3
4,708,312 + +1.1
4,708,313 - +1.6
4,708,366 - +1.0
4,708,371 - -0.1
4,708,395 + +2.1
4,708,395 + +0.5
4,708,395 + +0.9
4,708,396 - +1.2
4,708,396 - +0.7
4,708,399 + +1.3
4,708,399 + +1.0
4,708,399 + +0.9
4,708,399 + -1.2
4,708,399 + +0.9
4,708,399 + +0.9
4,708,400 - +1.1
4,708,400 - +0.9
4,708,400 - +1.0
4,708,403 + +0.3
4,708,403 + +0.7
4,708,403 + +0.9
4,708,404 - +1.5
4,708,419 + +1.9
4,708,487 - +1.3
4,708,487 - +0.6
4,708,487 - -0.4
4,708,490 - +1.2
4,708,589 - +1.4
4,708,706 + CA264_20435 0.12 +0.8
4,708,707 - CA264_20435 0.12 +0.7
4,708,784 - CA264_20435 0.16 +2.9
4,708,837 + CA264_20435 0.19 +0.8
4,708,838 - CA264_20435 0.19 +0.2
4,708,857 + CA264_20435 0.20 +0.6
4,708,858 - CA264_20435 0.20 -0.3
4,708,858 - CA264_20435 0.20 +0.9
4,708,899 + CA264_20435 0.22 +0.8
4,708,899 + CA264_20435 0.22 +0.5
4,708,900 - CA264_20435 0.22 +1.4
4,708,900 - CA264_20435 0.22 +0.7
4,708,903 + CA264_20435 0.22 +1.0
4,708,903 + CA264_20435 0.22 +0.4
4,708,903 + CA264_20435 0.22 +0.6
4,708,903 + CA264_20435 0.22 +0.5
4,708,904 - CA264_20435 0.22 +1.2
4,708,959 - CA264_20435 0.25 +1.3
4,708,992 - CA264_20435 0.27 +0.4
4,709,001 + CA264_20435 0.28 +0.1
4,709,001 + CA264_20435 0.28 +0.7
4,709,001 + CA264_20435 0.28 +0.5
4,709,001 + CA264_20435 0.28 -0.0
4,709,001 + CA264_20435 0.28 +0.9
4,709,006 + CA264_20435 0.28 -0.1
4,709,061 - CA264_20435 0.31 +1.0
4,709,073 + CA264_20435 0.31 +0.8
4,709,103 + CA264_20435 0.33 +0.5
4,709,104 - CA264_20435 0.33 +1.3
4,709,104 - CA264_20435 0.33 +1.7
4,709,104 - CA264_20435 0.33 +2.1
4,709,139 + CA264_20435 0.35 +0.3
4,709,368 + CA264_20435 0.47 -0.4
4,709,391 + CA264_20435 0.48 +0.7
4,709,574 - CA264_20435 0.58 +1.7
4,709,640 + CA264_20435 0.62 +0.6
4,709,643 - CA264_20435 0.62 +1.3
4,709,680 - CA264_20435 0.64 +1.3
4,709,739 - CA264_20435 0.67 +0.8
4,709,748 - CA264_20435 0.68 -0.3
4,709,767 - CA264_20435 0.69 +0.9
4,709,804 + CA264_20435 0.71 +0.5
4,709,804 + CA264_20435 0.71 +0.6
4,709,805 - CA264_20435 0.71 +0.2
4,709,915 + CA264_20435 0.77 +1.2
4,709,916 - CA264_20435 0.77 +0.6
4,709,930 - CA264_20435 0.77 +0.5
4,710,004 - CA264_20435 0.81 +0.3
4,710,004 - CA264_20435 0.81 +1.1
4,710,035 - CA264_20435 0.83 +0.9
4,710,163 + CA264_20435 0.90 -0.3
4,710,250 - +0.2
4,710,250 - +1.1
4,710,257 + +0.4
4,710,257 + -0.4
4,710,260 + -0.1
4,710,260 + -0.4
4,710,261 - -0.0
4,710,261 - +0.4
4,710,280 + -0.1
4,710,420 - +4.2
4,710,645 + CA264_20440 0.86 +2.9
4,710,646 - CA264_20440 0.87 +4.8
4,710,697 + +4.4
4,710,751 + -1.9
4,710,752 - +1.0
4,710,752 - +1.7
4,710,754 - +1.5
4,710,792 - +4.1
4,710,864 - +1.8
4,710,885 + -1.1
4,710,886 - +1.8
4,710,931 + -1.6
4,710,931 + -2.3
4,710,951 - +1.0
4,710,951 - +1.3
4,711,022 - -0.4
4,711,031 + +0.6
4,711,031 + +0.0
4,711,044 + +0.5
4,711,045 - +1.3
4,711,103 - +2.6
4,711,135 + -0.6

Or see this region's nucleotide sequence