Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20350

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20340 and CA264_20345 are separated by 66 nucleotidesCA264_20345 and CA264_20350 are separated by 126 nucleotidesCA264_20350 and CA264_20355 are separated by 110 nucleotidesCA264_20355 and CA264_20360 are separated by 71 nucleotides CA264_20340: CA264_20340 - STAS/SEC14 domain-containing protein, at 4,685,889 to 4,686,245 _20340 CA264_20345: CA264_20345 - hypothetical protein, at 4,686,312 to 4,686,728 _20345 CA264_20350: CA264_20350 - hypothetical protein, at 4,686,855 to 4,688,786 _20350 CA264_20355: CA264_20355 - DUF421 domain-containing protein, at 4,688,897 to 4,689,334 _20355 CA264_20360: CA264_20360 - thiol reductase thioredoxin, at 4,689,406 to 4,689,732 _20360 Position (kb) 4686 4687 4688 4689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4686.053 kb on + strand, within CA264_20340at 4686.057 kb on - strand, within CA264_20340at 4686.075 kb on + strand, within CA264_20340at 4686.099 kb on + strand, within CA264_20340at 4686.100 kb on - strand, within CA264_20340at 4686.109 kb on + strand, within CA264_20340at 4686.109 kb on + strand, within CA264_20340at 4686.162 kb on + strand, within CA264_20340at 4686.162 kb on + strand, within CA264_20340at 4686.163 kb on - strand, within CA264_20340at 4686.170 kb on - strand, within CA264_20340at 4686.184 kb on - strand, within CA264_20340at 4686.232 kb on - strandat 4686.232 kb on - strandat 4686.232 kb on - strandat 4686.234 kb on + strandat 4686.235 kb on - strandat 4686.240 kb on + strandat 4686.241 kb on - strandat 4686.241 kb on - strandat 4686.251 kb on + strandat 4686.252 kb on - strandat 4686.252 kb on - strandat 4686.254 kb on - strandat 4686.266 kb on + strandat 4686.267 kb on - strandat 4686.267 kb on - strandat 4686.276 kb on + strandat 4686.387 kb on + strand, within CA264_20345at 4686.388 kb on - strand, within CA264_20345at 4686.565 kb on - strand, within CA264_20345at 4686.565 kb on - strand, within CA264_20345at 4686.565 kb on - strand, within CA264_20345at 4686.570 kb on + strand, within CA264_20345at 4686.571 kb on - strand, within CA264_20345at 4686.582 kb on + strand, within CA264_20345at 4686.643 kb on - strand, within CA264_20345at 4686.653 kb on + strand, within CA264_20345at 4686.654 kb on - strand, within CA264_20345at 4686.654 kb on - strand, within CA264_20345at 4686.738 kb on - strandat 4686.744 kb on - strandat 4686.745 kb on + strandat 4686.775 kb on + strandat 4686.775 kb on + strandat 4686.775 kb on + strandat 4686.775 kb on + strandat 4686.776 kb on - strandat 4686.776 kb on - strandat 4686.777 kb on + strandat 4686.779 kb on + strandat 4686.865 kb on + strandat 4686.865 kb on + strandat 4686.865 kb on + strandat 4686.866 kb on - strandat 4686.866 kb on - strandat 4686.889 kb on + strandat 4686.925 kb on + strandat 4686.926 kb on - strandat 4686.945 kb on - strandat 4686.945 kb on - strandat 4686.948 kb on + strandat 4686.948 kb on + strandat 4686.948 kb on + strandat 4686.949 kb on - strandat 4687.002 kb on + strandat 4687.002 kb on + strandat 4687.002 kb on + strandat 4687.002 kb on + strandat 4687.003 kb on - strandat 4687.003 kb on - strandat 4687.003 kb on - strandat 4687.008 kb on + strandat 4687.155 kb on + strand, within CA264_20350at 4687.199 kb on + strand, within CA264_20350at 4687.199 kb on + strand, within CA264_20350at 4687.245 kb on - strand, within CA264_20350at 4687.286 kb on + strand, within CA264_20350at 4687.476 kb on + strand, within CA264_20350at 4687.521 kb on + strand, within CA264_20350at 4687.521 kb on + strand, within CA264_20350at 4687.567 kb on + strand, within CA264_20350at 4687.582 kb on - strand, within CA264_20350at 4687.655 kb on + strand, within CA264_20350at 4687.810 kb on - strand, within CA264_20350at 4687.861 kb on - strand, within CA264_20350at 4687.872 kb on + strand, within CA264_20350at 4687.990 kb on - strand, within CA264_20350at 4688.013 kb on + strand, within CA264_20350at 4688.014 kb on - strand, within CA264_20350at 4688.023 kb on + strand, within CA264_20350at 4688.024 kb on - strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.028 kb on - strand, within CA264_20350at 4688.028 kb on - strand, within CA264_20350at 4688.028 kb on - strand, within CA264_20350at 4688.105 kb on - strand, within CA264_20350at 4688.167 kb on - strand, within CA264_20350at 4688.259 kb on + strand, within CA264_20350at 4688.262 kb on - strand, within CA264_20350at 4688.294 kb on - strand, within CA264_20350at 4688.410 kb on - strand, within CA264_20350at 4688.430 kb on + strand, within CA264_20350at 4688.432 kb on + strand, within CA264_20350at 4688.432 kb on + strand, within CA264_20350at 4688.433 kb on - strand, within CA264_20350at 4688.433 kb on - strand, within CA264_20350at 4688.438 kb on - strand, within CA264_20350at 4688.438 kb on - strand, within CA264_20350at 4688.499 kb on + strand, within CA264_20350at 4688.549 kb on + strand, within CA264_20350at 4688.589 kb on + strand, within CA264_20350at 4688.590 kb on - strand, within CA264_20350at 4688.590 kb on - strand, within CA264_20350at 4688.668 kb on + strandat 4688.669 kb on - strandat 4688.742 kb on + strandat 4688.785 kb on - strandat 4688.794 kb on - strandat 4688.796 kb on - strandat 4688.827 kb on + strandat 4689.008 kb on + strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.076 kb on + strand, within CA264_20355at 4689.117 kb on - strand, within CA264_20355at 4689.166 kb on - strand, within CA264_20355at 4689.229 kb on + strand, within CA264_20355at 4689.259 kb on + strand, within CA264_20355at 4689.773 kb on + strandat 4689.773 kb on + strandat 4689.776 kb on + strandat 4689.780 kb on + strandat 4689.785 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
4,686,053 + CA264_20340 0.46 -0.2
4,686,057 - CA264_20340 0.47 -0.5
4,686,075 + CA264_20340 0.52 +0.0
4,686,099 + CA264_20340 0.59 +0.5
4,686,100 - CA264_20340 0.59 -0.0
4,686,109 + CA264_20340 0.62 -0.2
4,686,109 + CA264_20340 0.62 -0.3
4,686,162 + CA264_20340 0.76 -0.7
4,686,162 + CA264_20340 0.76 -0.0
4,686,163 - CA264_20340 0.77 -1.6
4,686,170 - CA264_20340 0.79 -0.8
4,686,184 - CA264_20340 0.83 -0.3
4,686,232 - -0.1
4,686,232 - -1.5
4,686,232 - +0.2
4,686,234 + -0.4
4,686,235 - -0.4
4,686,240 + -2.5
4,686,241 - -0.1
4,686,241 - -0.0
4,686,251 + -1.3
4,686,252 - -0.6
4,686,252 - -0.2
4,686,254 - +1.1
4,686,266 + -1.4
4,686,267 - -0.8
4,686,267 - -0.3
4,686,276 + -1.4
4,686,387 + CA264_20345 0.18 +1.3
4,686,388 - CA264_20345 0.18 +0.3
4,686,565 - CA264_20345 0.61 -0.2
4,686,565 - CA264_20345 0.61 +0.6
4,686,565 - CA264_20345 0.61 -1.2
4,686,570 + CA264_20345 0.62 -1.1
4,686,571 - CA264_20345 0.62 +0.8
4,686,582 + CA264_20345 0.65 -1.2
4,686,643 - CA264_20345 0.79 -0.7
4,686,653 + CA264_20345 0.82 +1.1
4,686,654 - CA264_20345 0.82 -0.4
4,686,654 - CA264_20345 0.82 -2.5
4,686,738 - -0.4
4,686,744 - -0.6
4,686,745 + +0.6
4,686,775 + -0.6
4,686,775 + -0.4
4,686,775 + -0.3
4,686,775 + -0.9
4,686,776 - -0.6
4,686,776 - -0.2
4,686,777 + +0.7
4,686,779 + +1.9
4,686,865 + +0.6
4,686,865 + +1.2
4,686,865 + +0.7
4,686,866 - -0.4
4,686,866 - +0.7
4,686,889 + +0.6
4,686,925 + +0.9
4,686,926 - -0.9
4,686,945 - +1.7
4,686,945 - +1.1
4,686,948 + +0.6
4,686,948 + -0.1
4,686,948 + +0.8
4,686,949 - +1.0
4,687,002 + +2.2
4,687,002 + +0.5
4,687,002 + -0.2
4,687,002 + +0.6
4,687,003 - +0.9
4,687,003 - -0.2
4,687,003 - +1.2
4,687,008 + +1.7
4,687,155 + CA264_20350 0.16 +0.4
4,687,199 + CA264_20350 0.18 +0.6
4,687,199 + CA264_20350 0.18 +1.8
4,687,245 - CA264_20350 0.20 +1.1
4,687,286 + CA264_20350 0.22 +1.0
4,687,476 + CA264_20350 0.32 +0.5
4,687,521 + CA264_20350 0.34 +0.5
4,687,521 + CA264_20350 0.34 +2.2
4,687,567 + CA264_20350 0.37 +0.7
4,687,582 - CA264_20350 0.38 +1.7
4,687,655 + CA264_20350 0.41 +0.8
4,687,810 - CA264_20350 0.49 +0.8
4,687,861 - CA264_20350 0.52 +0.1
4,687,872 + CA264_20350 0.53 +0.8
4,687,990 - CA264_20350 0.59 +0.9
4,688,013 + CA264_20350 0.60 +0.8
4,688,014 - CA264_20350 0.60 +1.2
4,688,023 + CA264_20350 0.60 -0.6
4,688,024 - CA264_20350 0.61 +0.6
4,688,027 + CA264_20350 0.61 +0.9
4,688,027 + CA264_20350 0.61 +1.0
4,688,027 + CA264_20350 0.61 +0.1
4,688,027 + CA264_20350 0.61 +1.1
4,688,028 - CA264_20350 0.61 +0.9
4,688,028 - CA264_20350 0.61 -0.5
4,688,028 - CA264_20350 0.61 +0.5
4,688,105 - CA264_20350 0.65 +1.1
4,688,167 - CA264_20350 0.68 +0.8
4,688,259 + CA264_20350 0.73 +1.8
4,688,262 - CA264_20350 0.73 +1.3
4,688,294 - CA264_20350 0.74 +1.0
4,688,410 - CA264_20350 0.80 +1.0
4,688,430 + CA264_20350 0.82 +0.7
4,688,432 + CA264_20350 0.82 +2.2
4,688,432 + CA264_20350 0.82 +0.8
4,688,433 - CA264_20350 0.82 +0.9
4,688,433 - CA264_20350 0.82 -0.1
4,688,438 - CA264_20350 0.82 +0.2
4,688,438 - CA264_20350 0.82 -0.0
4,688,499 + CA264_20350 0.85 +0.5
4,688,549 + CA264_20350 0.88 +1.6
4,688,589 + CA264_20350 0.90 +2.4
4,688,590 - CA264_20350 0.90 +0.8
4,688,590 - CA264_20350 0.90 +0.4
4,688,668 + +2.3
4,688,669 - +1.1
4,688,742 + +0.3
4,688,785 - +0.4
4,688,794 - +2.1
4,688,796 - +0.6
4,688,827 + -0.7
4,689,008 + CA264_20355 0.25 +0.9
4,689,009 - CA264_20355 0.26 +0.1
4,689,009 - CA264_20355 0.26 +1.9
4,689,009 - CA264_20355 0.26 +0.7
4,689,009 - CA264_20355 0.26 -0.1
4,689,076 + CA264_20355 0.41 -0.6
4,689,117 - CA264_20355 0.50 +0.3
4,689,166 - CA264_20355 0.61 -0.3
4,689,229 + CA264_20355 0.76 -0.5
4,689,259 + CA264_20355 0.83 -1.9
4,689,773 + +0.4
4,689,773 + +0.1
4,689,776 + +0.6
4,689,780 + -3.4
4,689,785 + -0.1

Or see this region's nucleotide sequence