Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20115

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20110 and CA264_20115 are separated by 179 nucleotidesCA264_20115 and CA264_20120 are separated by 75 nucleotidesCA264_20120 and CA264_20125 are separated by 447 nucleotides CA264_20110: CA264_20110 - DNA helicase RecQ, at 4,636,044 to 4,638,224 _20110 CA264_20115: CA264_20115 - phosphoribosylamine--glycine ligase, at 4,638,404 to 4,639,693 _20115 CA264_20120: CA264_20120 - hypothetical protein, at 4,639,769 to 4,640,182 _20120 CA264_20125: CA264_20125 - hypothetical protein, at 4,640,630 to 4,640,971 _20125 Position (kb) 4638 4639 4640Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4637.532 kb on - strand, within CA264_20110at 4637.571 kb on - strand, within CA264_20110at 4637.817 kb on - strand, within CA264_20110at 4637.844 kb on + strand, within CA264_20110at 4638.054 kb on + strandat 4638.055 kb on - strandat 4638.239 kb on - strandat 4638.296 kb on + strandat 4638.309 kb on - strandat 4638.309 kb on - strandat 4638.337 kb on + strandat 4638.337 kb on + strandat 4638.374 kb on + strandat 4638.379 kb on - strandat 4638.403 kb on + strandat 4638.412 kb on - strandat 4638.412 kb on - strandat 4638.420 kb on + strandat 4638.530 kb on - strandat 4638.530 kb on - strandat 4638.540 kb on + strand, within CA264_20115at 4638.544 kb on + strand, within CA264_20115at 4638.545 kb on - strand, within CA264_20115at 4638.592 kb on + strand, within CA264_20115at 4638.593 kb on - strand, within CA264_20115at 4638.593 kb on - strand, within CA264_20115at 4638.673 kb on + strand, within CA264_20115at 4638.673 kb on + strand, within CA264_20115at 4638.673 kb on + strand, within CA264_20115at 4638.785 kb on - strand, within CA264_20115at 4638.833 kb on + strand, within CA264_20115at 4638.897 kb on - strand, within CA264_20115at 4638.980 kb on + strand, within CA264_20115at 4638.980 kb on + strand, within CA264_20115at 4639.011 kb on + strand, within CA264_20115at 4639.012 kb on - strand, within CA264_20115at 4639.032 kb on - strand, within CA264_20115at 4639.059 kb on - strand, within CA264_20115at 4639.059 kb on - strand, within CA264_20115at 4639.060 kb on + strand, within CA264_20115at 4639.061 kb on - strand, within CA264_20115at 4639.081 kb on + strand, within CA264_20115at 4639.081 kb on + strand, within CA264_20115at 4639.389 kb on + strand, within CA264_20115at 4639.389 kb on + strand, within CA264_20115at 4639.416 kb on + strand, within CA264_20115at 4639.417 kb on - strand, within CA264_20115at 4639.525 kb on - strand, within CA264_20115at 4639.631 kb on - strandat 4639.692 kb on - strandat 4639.709 kb on - strandat 4639.770 kb on + strandat 4639.770 kb on + strandat 4639.776 kb on + strandat 4639.962 kb on - strand, within CA264_20120at 4640.070 kb on - strand, within CA264_20120at 4640.088 kb on - strand, within CA264_20120at 4640.141 kb on - strandat 4640.167 kb on + strandat 4640.170 kb on - strandat 4640.178 kb on + strandat 4640.300 kb on + strandat 4640.300 kb on + strandat 4640.349 kb on - strandat 4640.380 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.388 kb on + strandat 4640.388 kb on + strandat 4640.503 kb on + strandat 4640.504 kb on - strandat 4640.542 kb on + strandat 4640.543 kb on - strandat 4640.577 kb on + strandat 4640.578 kb on - strandat 4640.578 kb on - strandat 4640.578 kb on - strandat 4640.601 kb on - strandat 4640.616 kb on - strandat 4640.629 kb on + strandat 4640.649 kb on - strandat 4640.653 kb on + strandat 4640.653 kb on + strandat 4640.654 kb on - strandat 4640.682 kb on + strand, within CA264_20125at 4640.693 kb on - strand, within CA264_20125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
4,637,532 - CA264_20110 0.68 +2.9
4,637,571 - CA264_20110 0.70 +2.8
4,637,817 - CA264_20110 0.81 +2.9
4,637,844 + CA264_20110 0.83 +2.5
4,638,054 + +2.8
4,638,055 - +2.9
4,638,239 - +2.7
4,638,296 + -0.8
4,638,309 - +1.8
4,638,309 - +2.5
4,638,337 + +0.5
4,638,337 + +0.2
4,638,374 + -0.1
4,638,379 - +1.4
4,638,403 + +1.9
4,638,412 - +0.8
4,638,412 - +1.6
4,638,420 + -0.2
4,638,530 - +0.9
4,638,530 - +1.5
4,638,540 + CA264_20115 0.11 -0.8
4,638,544 + CA264_20115 0.11 -0.0
4,638,545 - CA264_20115 0.11 +0.7
4,638,592 + CA264_20115 0.15 -1.9
4,638,593 - CA264_20115 0.15 +0.9
4,638,593 - CA264_20115 0.15 +2.1
4,638,673 + CA264_20115 0.21 -0.0
4,638,673 + CA264_20115 0.21 -0.3
4,638,673 + CA264_20115 0.21 -0.4
4,638,785 - CA264_20115 0.30 +0.7
4,638,833 + CA264_20115 0.33 -0.7
4,638,897 - CA264_20115 0.38 +0.5
4,638,980 + CA264_20115 0.45 -0.6
4,638,980 + CA264_20115 0.45 -0.2
4,639,011 + CA264_20115 0.47 -0.4
4,639,012 - CA264_20115 0.47 +0.3
4,639,032 - CA264_20115 0.49 +0.3
4,639,059 - CA264_20115 0.51 -0.1
4,639,059 - CA264_20115 0.51 +0.9
4,639,060 + CA264_20115 0.51 -0.4
4,639,061 - CA264_20115 0.51 +1.1
4,639,081 + CA264_20115 0.52 -1.1
4,639,081 + CA264_20115 0.52 -0.0
4,639,389 + CA264_20115 0.76 +2.3
4,639,389 + CA264_20115 0.76 -1.0
4,639,416 + CA264_20115 0.78 -1.3
4,639,417 - CA264_20115 0.79 +0.4
4,639,525 - CA264_20115 0.87 +0.7
4,639,631 - -0.2
4,639,692 - -1.6
4,639,709 - -0.4
4,639,770 + +1.9
4,639,770 + +1.2
4,639,776 + +2.5
4,639,962 - CA264_20120 0.47 -1.4
4,640,070 - CA264_20120 0.73 -0.8
4,640,088 - CA264_20120 0.77 -0.6
4,640,141 - +0.3
4,640,167 + +1.7
4,640,170 - +0.3
4,640,178 + +1.9
4,640,300 + +1.7
4,640,300 + +1.8
4,640,349 - +0.8
4,640,380 + +2.9
4,640,385 + +2.8
4,640,385 + +3.1
4,640,385 + +3.1
4,640,385 + +2.6
4,640,385 + +2.5
4,640,385 + +2.7
4,640,385 + +3.0
4,640,385 + +2.9
4,640,385 + +1.7
4,640,385 + +2.8
4,640,385 + +2.8
4,640,385 + +4.0
4,640,385 + +2.5
4,640,385 + +2.2
4,640,385 + +3.0
4,640,385 + +4.7
4,640,385 + +2.3
4,640,385 + +2.8
4,640,385 + +2.5
4,640,385 + +2.6
4,640,385 + +4.1
4,640,385 + +2.9
4,640,386 - +0.6
4,640,386 - +1.6
4,640,386 - +1.0
4,640,386 - +2.2
4,640,386 - +1.7
4,640,386 - +1.5
4,640,386 - +3.4
4,640,386 - +1.1
4,640,386 - +1.8
4,640,386 - +1.0
4,640,386 - +1.8
4,640,386 - +1.8
4,640,386 - +1.1
4,640,386 - -0.1
4,640,386 - +1.6
4,640,386 - +1.5
4,640,386 - +1.5
4,640,386 - +1.3
4,640,388 + +2.9
4,640,388 + +2.9
4,640,503 + +3.2
4,640,504 - +1.2
4,640,542 + +2.8
4,640,543 - +2.3
4,640,577 + +2.8
4,640,578 - -0.3
4,640,578 - +3.5
4,640,578 - +1.2
4,640,601 - +1.5
4,640,616 - +1.2
4,640,629 + +0.3
4,640,649 - -0.1
4,640,653 + +0.2
4,640,653 + +1.4
4,640,654 - +1.0
4,640,682 + CA264_20125 0.15 +1.7
4,640,693 - CA264_20125 0.18 +0.6

Or see this region's nucleotide sequence