Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19925

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19920 and CA264_19925 are separated by 305 nucleotidesCA264_19925 and CA264_19930 are separated by 2 nucleotides CA264_19920: CA264_19920 - alanine glycine permease, at 4,593,234 to 4,594,793 _19920 CA264_19925: CA264_19925 - peptidyl-prolyl cis-trans isomerase, at 4,595,099 to 4,595,749 _19925 CA264_19930: CA264_19930 - NAD(P)-dependent oxidoreductase, at 4,595,752 to 4,596,663 _19930 Position (kb) 4595 4596Strain fitness (log2 ratio) -1 0 1 2 3 4at 4594.124 kb on + strand, within CA264_19920at 4594.221 kb on + strand, within CA264_19920at 4594.222 kb on - strand, within CA264_19920at 4594.261 kb on + strand, within CA264_19920at 4594.262 kb on - strand, within CA264_19920at 4594.431 kb on - strand, within CA264_19920at 4594.510 kb on + strand, within CA264_19920at 4594.511 kb on - strand, within CA264_19920at 4594.570 kb on + strand, within CA264_19920at 4594.571 kb on - strand, within CA264_19920at 4594.571 kb on - strand, within CA264_19920at 4594.571 kb on - strand, within CA264_19920at 4594.637 kb on + strand, within CA264_19920at 4594.638 kb on - strandat 4594.658 kb on + strandat 4594.670 kb on + strandat 4594.777 kb on - strandat 4594.795 kb on + strandat 4594.796 kb on - strandat 4594.796 kb on - strandat 4594.804 kb on + strandat 4594.805 kb on - strandat 4594.805 kb on - strandat 4594.961 kb on + strandat 4595.090 kb on + strandat 4595.090 kb on + strandat 4595.090 kb on + strandat 4595.090 kb on + strandat 4595.091 kb on - strandat 4595.091 kb on - strandat 4595.091 kb on - strandat 4595.094 kb on + strandat 4595.094 kb on + strandat 4595.094 kb on + strandat 4595.095 kb on - strandat 4595.095 kb on - strandat 4595.095 kb on - strandat 4595.098 kb on + strandat 4595.099 kb on - strandat 4595.116 kb on + strandat 4595.196 kb on + strand, within CA264_19925at 4595.196 kb on + strand, within CA264_19925at 4595.196 kb on + strand, within CA264_19925at 4595.197 kb on - strand, within CA264_19925at 4595.516 kb on + strand, within CA264_19925at 4595.517 kb on - strand, within CA264_19925at 4595.561 kb on + strand, within CA264_19925at 4595.561 kb on + strand, within CA264_19925at 4595.561 kb on + strand, within CA264_19925at 4595.562 kb on - strand, within CA264_19925at 4595.562 kb on - strand, within CA264_19925at 4595.583 kb on + strand, within CA264_19925at 4595.584 kb on - strand, within CA264_19925at 4595.584 kb on - strand, within CA264_19925at 4595.605 kb on + strand, within CA264_19925at 4595.605 kb on + strand, within CA264_19925at 4595.606 kb on - strand, within CA264_19925at 4595.606 kb on - strand, within CA264_19925at 4595.708 kb on + strandat 4595.708 kb on + strandat 4595.715 kb on - strandat 4595.716 kb on + strandat 4595.716 kb on + strandat 4595.717 kb on - strandat 4595.717 kb on - strandat 4595.720 kb on + strandat 4595.747 kb on + strandat 4595.748 kb on - strandat 4596.661 kb on + strandat 4596.661 kb on + strandat 4596.662 kb on - strandat 4596.682 kb on + strandat 4596.736 kb on + strandat 4596.737 kb on - strandat 4596.737 kb on - strandat 4596.740 kb on + strandat 4596.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,594,124 + CA264_19920 0.57 +4.4
4,594,221 + CA264_19920 0.63 +4.0
4,594,222 - CA264_19920 0.63 +2.9
4,594,261 + CA264_19920 0.66 +3.5
4,594,262 - CA264_19920 0.66 +3.0
4,594,431 - CA264_19920 0.77 +2.6
4,594,510 + CA264_19920 0.82 +4.3
4,594,511 - CA264_19920 0.82 +2.4
4,594,570 + CA264_19920 0.86 +4.0
4,594,571 - CA264_19920 0.86 +3.3
4,594,571 - CA264_19920 0.86 +2.4
4,594,571 - CA264_19920 0.86 +1.5
4,594,637 + CA264_19920 0.90 +4.0
4,594,638 - +0.1
4,594,658 + +3.1
4,594,670 + +4.0
4,594,777 - +2.7
4,594,795 + +3.9
4,594,796 - +3.2
4,594,796 - +3.3
4,594,804 + +4.0
4,594,805 - +0.9
4,594,805 - +2.4
4,594,961 + +2.8
4,595,090 + +2.9
4,595,090 + +3.4
4,595,090 + +2.6
4,595,090 + +3.3
4,595,091 - +3.3
4,595,091 - +2.8
4,595,091 - +3.3
4,595,094 + +2.8
4,595,094 + +3.0
4,595,094 + +2.5
4,595,095 - +1.6
4,595,095 - +2.9
4,595,095 - +3.7
4,595,098 + +2.8
4,595,099 - +2.5
4,595,116 + +2.8
4,595,196 + CA264_19925 0.15 +1.6
4,595,196 + CA264_19925 0.15 +2.7
4,595,196 + CA264_19925 0.15 +2.9
4,595,197 - CA264_19925 0.15 +2.9
4,595,516 + CA264_19925 0.64 +3.7
4,595,517 - CA264_19925 0.64 +3.0
4,595,561 + CA264_19925 0.71 +2.7
4,595,561 + CA264_19925 0.71 +2.7
4,595,561 + CA264_19925 0.71 +2.2
4,595,562 - CA264_19925 0.71 +3.4
4,595,562 - CA264_19925 0.71 +3.6
4,595,583 + CA264_19925 0.74 +3.3
4,595,584 - CA264_19925 0.75 +2.9
4,595,584 - CA264_19925 0.75 +3.6
4,595,605 + CA264_19925 0.78 +3.2
4,595,605 + CA264_19925 0.78 +3.7
4,595,606 - CA264_19925 0.78 +3.2
4,595,606 - CA264_19925 0.78 +2.9
4,595,708 + +2.5
4,595,708 + +2.7
4,595,715 - +3.6
4,595,716 + +4.4
4,595,716 + +3.4
4,595,717 - +3.3
4,595,717 - +2.7
4,595,720 + +2.8
4,595,747 + +2.5
4,595,748 - +2.2
4,596,661 + +3.6
4,596,661 + +3.5
4,596,662 - +1.1
4,596,682 + +3.9
4,596,736 + +3.5
4,596,737 - +1.0
4,596,737 - +0.9
4,596,740 + +4.0
4,596,740 + +3.0

Or see this region's nucleotide sequence