Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18450

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18440 and CA264_18445 are separated by 94 nucleotidesCA264_18445 and CA264_18450 are separated by 235 nucleotidesCA264_18450 and CA264_18455 are separated by 36 nucleotides CA264_18440: CA264_18440 - 23S ribosomal RNA, at 4,288,174 to 4,291,059 _18440 CA264_18445: CA264_18445 - 5S ribosomal RNA, at 4,291,154 to 4,291,265 _18445 CA264_18450: CA264_18450 - aspartate ammonia-lyase, at 4,291,501 to 4,292,910 _18450 CA264_18455: CA264_18455 - ribonuclease D, at 4,292,947 to 4,294,134 _18455 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -2 -1 0 1 2at 4291.596 kb on + strandat 4291.661 kb on - strand, within CA264_18450at 4291.661 kb on - strand, within CA264_18450at 4291.681 kb on - strand, within CA264_18450at 4291.764 kb on + strand, within CA264_18450at 4291.767 kb on - strand, within CA264_18450at 4291.885 kb on + strand, within CA264_18450at 4291.885 kb on + strand, within CA264_18450at 4291.912 kb on + strand, within CA264_18450at 4291.923 kb on + strand, within CA264_18450at 4291.923 kb on + strand, within CA264_18450at 4291.938 kb on + strand, within CA264_18450at 4291.981 kb on - strand, within CA264_18450at 4291.992 kb on + strand, within CA264_18450at 4291.992 kb on + strand, within CA264_18450at 4291.993 kb on - strand, within CA264_18450at 4292.083 kb on + strand, within CA264_18450at 4292.084 kb on - strand, within CA264_18450at 4292.084 kb on - strand, within CA264_18450at 4292.084 kb on - strand, within CA264_18450at 4292.084 kb on - strand, within CA264_18450at 4292.087 kb on + strand, within CA264_18450at 4292.285 kb on - strand, within CA264_18450at 4292.408 kb on - strand, within CA264_18450at 4292.427 kb on + strand, within CA264_18450at 4292.470 kb on - strand, within CA264_18450at 4292.526 kb on - strand, within CA264_18450at 4292.531 kb on + strand, within CA264_18450at 4292.566 kb on + strand, within CA264_18450at 4292.567 kb on - strand, within CA264_18450at 4292.664 kb on + strand, within CA264_18450at 4292.810 kb on + strandat 4292.850 kb on - strandat 4292.914 kb on - strandat 4292.917 kb on - strandat 4292.917 kb on - strandat 4292.921 kb on - strandat 4292.921 kb on - strandat 4292.921 kb on - strandat 4292.965 kb on - strandat 4293.035 kb on + strandat 4293.036 kb on - strandat 4293.063 kb on + strandat 4293.065 kb on + strandat 4293.065 kb on + strandat 4293.066 kb on - strand, within CA264_18455at 4293.122 kb on + strand, within CA264_18455at 4293.122 kb on + strand, within CA264_18455at 4293.123 kb on - strand, within CA264_18455at 4293.123 kb on - strand, within CA264_18455at 4293.396 kb on + strand, within CA264_18455at 4293.401 kb on + strand, within CA264_18455at 4293.461 kb on - strand, within CA264_18455at 4293.477 kb on - strand, within CA264_18455at 4293.637 kb on - strand, within CA264_18455at 4293.788 kb on - strand, within CA264_18455at 4293.833 kb on - strand, within CA264_18455

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,291,596 + +1.7
4,291,661 - CA264_18450 0.11 +1.5
4,291,661 - CA264_18450 0.11 +1.0
4,291,681 - CA264_18450 0.13 +0.8
4,291,764 + CA264_18450 0.19 +1.6
4,291,767 - CA264_18450 0.19 +0.6
4,291,885 + CA264_18450 0.27 -0.3
4,291,885 + CA264_18450 0.27 +2.4
4,291,912 + CA264_18450 0.29 -1.0
4,291,923 + CA264_18450 0.30 +0.8
4,291,923 + CA264_18450 0.30 +0.6
4,291,938 + CA264_18450 0.31 +1.4
4,291,981 - CA264_18450 0.34 +1.0
4,291,992 + CA264_18450 0.35 +2.3
4,291,992 + CA264_18450 0.35 +0.7
4,291,993 - CA264_18450 0.35 +0.7
4,292,083 + CA264_18450 0.41 +0.7
4,292,084 - CA264_18450 0.41 +1.5
4,292,084 - CA264_18450 0.41 +0.5
4,292,084 - CA264_18450 0.41 +0.6
4,292,084 - CA264_18450 0.41 +0.9
4,292,087 + CA264_18450 0.42 +1.4
4,292,285 - CA264_18450 0.56 +0.9
4,292,408 - CA264_18450 0.64 +2.1
4,292,427 + CA264_18450 0.66 -0.1
4,292,470 - CA264_18450 0.69 +1.1
4,292,526 - CA264_18450 0.73 +0.7
4,292,531 + CA264_18450 0.73 +0.8
4,292,566 + CA264_18450 0.76 +0.9
4,292,567 - CA264_18450 0.76 +1.4
4,292,664 + CA264_18450 0.82 +1.3
4,292,810 + +0.1
4,292,850 - +1.1
4,292,914 - +0.5
4,292,917 - -0.6
4,292,917 - +1.3
4,292,921 - +0.4
4,292,921 - +0.2
4,292,921 - +0.1
4,292,965 - -0.0
4,293,035 + +2.2
4,293,036 - +2.4
4,293,063 + -1.8
4,293,065 + -1.6
4,293,065 + -1.6
4,293,066 - CA264_18455 0.10 -0.4
4,293,122 + CA264_18455 0.15 -0.1
4,293,122 + CA264_18455 0.15 -0.5
4,293,123 - CA264_18455 0.15 -0.2
4,293,123 - CA264_18455 0.15 -0.7
4,293,396 + CA264_18455 0.38 +0.4
4,293,401 + CA264_18455 0.38 -0.1
4,293,461 - CA264_18455 0.43 -0.0
4,293,477 - CA264_18455 0.45 -0.9
4,293,637 - CA264_18455 0.58 +1.1
4,293,788 - CA264_18455 0.71 -0.3
4,293,833 - CA264_18455 0.75 -1.7

Or see this region's nucleotide sequence