Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18065

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18055 and CA264_18060 are separated by 82 nucleotidesCA264_18060 and CA264_18065 are separated by 112 nucleotidesCA264_18065 and CA264_18070 are separated by 314 nucleotides CA264_18055: CA264_18055 - hypothetical protein, at 4,198,773 to 4,199,456 _18055 CA264_18060: CA264_18060 - hypothetical protein, at 4,199,539 to 4,200,117 _18060 CA264_18065: CA264_18065 - asparagine--tRNA ligase, at 4,200,230 to 4,201,669 _18065 CA264_18070: CA264_18070 - RNA polymerase sigma-54 factor, at 4,201,984 to 4,203,426 _18070 Position (kb) 4200 4201 4202Strain fitness (log2 ratio) -2 -1 0 1 2at 4199.266 kb on + strand, within CA264_18055at 4199.266 kb on + strand, within CA264_18055at 4199.266 kb on + strand, within CA264_18055at 4199.267 kb on - strand, within CA264_18055at 4199.279 kb on + strand, within CA264_18055at 4199.279 kb on + strand, within CA264_18055at 4199.280 kb on - strand, within CA264_18055at 4199.280 kb on - strand, within CA264_18055at 4199.301 kb on + strand, within CA264_18055at 4199.301 kb on + strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.348 kb on - strand, within CA264_18055at 4199.348 kb on - strand, within CA264_18055at 4199.362 kb on + strand, within CA264_18055at 4199.362 kb on + strand, within CA264_18055at 4199.363 kb on - strand, within CA264_18055at 4199.368 kb on + strand, within CA264_18055at 4199.368 kb on + strand, within CA264_18055at 4199.369 kb on - strand, within CA264_18055at 4199.403 kb on + strandat 4199.417 kb on + strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.431 kb on - strandat 4199.431 kb on - strandat 4199.431 kb on - strandat 4199.468 kb on + strandat 4199.469 kb on - strandat 4199.471 kb on + strandat 4199.482 kb on - strandat 4199.540 kb on + strandat 4199.714 kb on + strand, within CA264_18060at 4199.715 kb on - strand, within CA264_18060at 4199.715 kb on - strand, within CA264_18060at 4199.727 kb on - strand, within CA264_18060at 4199.730 kb on + strand, within CA264_18060at 4199.730 kb on + strand, within CA264_18060at 4199.730 kb on + strand, within CA264_18060at 4199.731 kb on - strand, within CA264_18060at 4199.731 kb on - strand, within CA264_18060at 4199.817 kb on + strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.834 kb on + strand, within CA264_18060at 4199.835 kb on - strand, within CA264_18060at 4199.882 kb on + strand, within CA264_18060at 4199.883 kb on - strand, within CA264_18060at 4199.885 kb on + strand, within CA264_18060at 4199.886 kb on - strand, within CA264_18060at 4199.886 kb on - strand, within CA264_18060at 4199.961 kb on + strand, within CA264_18060at 4200.132 kb on - strandat 4200.220 kb on - strandat 4200.220 kb on - strandat 4201.671 kb on + strandat 4201.673 kb on + strandat 4201.674 kb on - strandat 4201.674 kb on - strandat 4201.699 kb on + strandat 4201.700 kb on - strandat 4201.711 kb on + strandat 4201.725 kb on + strandat 4201.734 kb on - strandat 4201.901 kb on - strandat 4201.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,199,266 + CA264_18055 0.72 +1.0
4,199,266 + CA264_18055 0.72 +0.3
4,199,266 + CA264_18055 0.72 -0.5
4,199,267 - CA264_18055 0.72 +1.1
4,199,279 + CA264_18055 0.74 +0.6
4,199,279 + CA264_18055 0.74 +0.2
4,199,280 - CA264_18055 0.74 +0.8
4,199,280 - CA264_18055 0.74 +0.8
4,199,301 + CA264_18055 0.77 +0.5
4,199,301 + CA264_18055 0.77 +1.0
4,199,302 - CA264_18055 0.77 +1.5
4,199,302 - CA264_18055 0.77 +1.3
4,199,302 - CA264_18055 0.77 +1.3
4,199,302 - CA264_18055 0.77 +1.2
4,199,348 - CA264_18055 0.84 +1.6
4,199,348 - CA264_18055 0.84 +1.6
4,199,362 + CA264_18055 0.86 +0.7
4,199,362 + CA264_18055 0.86 +0.2
4,199,363 - CA264_18055 0.86 +1.2
4,199,368 + CA264_18055 0.87 -0.1
4,199,368 + CA264_18055 0.87 -0.5
4,199,369 - CA264_18055 0.87 +1.4
4,199,403 + +0.8
4,199,417 + +0.4
4,199,425 - +0.7
4,199,425 - +0.8
4,199,425 - +1.0
4,199,425 - +0.9
4,199,425 - +1.5
4,199,431 - +1.7
4,199,431 - +1.8
4,199,431 - +1.3
4,199,468 + +0.8
4,199,469 - +1.3
4,199,471 + -0.4
4,199,482 - +0.1
4,199,540 + -1.4
4,199,714 + CA264_18060 0.30 +0.6
4,199,715 - CA264_18060 0.30 +1.2
4,199,715 - CA264_18060 0.30 +0.3
4,199,727 - CA264_18060 0.32 +1.5
4,199,730 + CA264_18060 0.33 +1.6
4,199,730 + CA264_18060 0.33 +1.3
4,199,730 + CA264_18060 0.33 +0.6
4,199,731 - CA264_18060 0.33 +1.1
4,199,731 - CA264_18060 0.33 +1.1
4,199,817 + CA264_18060 0.48 +0.5
4,199,831 - CA264_18060 0.50 +0.4
4,199,831 - CA264_18060 0.50 +1.4
4,199,831 - CA264_18060 0.50 +1.1
4,199,831 - CA264_18060 0.50 +0.9
4,199,834 + CA264_18060 0.51 +1.1
4,199,835 - CA264_18060 0.51 +1.1
4,199,882 + CA264_18060 0.59 +1.1
4,199,883 - CA264_18060 0.59 +0.5
4,199,885 + CA264_18060 0.60 -0.5
4,199,886 - CA264_18060 0.60 +1.5
4,199,886 - CA264_18060 0.60 +0.5
4,199,961 + CA264_18060 0.73 -1.8
4,200,132 - +1.5
4,200,220 - +0.1
4,200,220 - -0.2
4,201,671 + +0.4
4,201,673 + +0.7
4,201,674 - -0.2
4,201,674 - +0.0
4,201,699 + -0.4
4,201,700 - -2.4
4,201,711 + +0.2
4,201,725 + +0.7
4,201,734 - +0.6
4,201,901 - -0.2
4,201,933 + +0.8

Or see this region's nucleotide sequence