Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17330

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17325 and CA264_17330 are separated by 136 nucleotidesCA264_17330 and CA264_17335 are separated by 415 nucleotides CA264_17325: CA264_17325 - isoleucine--tRNA ligase, at 4,036,291 to 4,039,644 _17325 CA264_17330: CA264_17330 - lipoprotein signal peptidase, at 4,039,781 to 4,040,404 _17330 CA264_17335: CA264_17335 - HAD family hydrolase, at 4,040,820 to 4,041,425 _17335 Position (kb) 4039 4040 4041Strain fitness (log2 ratio) -2 -1 0 1 2at 4039.646 kb on + strandat 4039.678 kb on + strandat 4039.692 kb on + strandat 4039.693 kb on - strandat 4039.694 kb on + strandat 4039.717 kb on + strandat 4039.720 kb on + strandat 4039.721 kb on - strandat 4039.742 kb on - strandat 4039.742 kb on - strandat 4039.749 kb on - strandat 4039.769 kb on + strandat 4040.410 kb on + strandat 4040.410 kb on + strandat 4040.410 kb on + strandat 4040.427 kb on - strandat 4040.490 kb on + strandat 4040.523 kb on + strandat 4040.532 kb on - strandat 4040.560 kb on + strandat 4040.560 kb on + strandat 4040.573 kb on - strandat 4040.573 kb on - strandat 4040.575 kb on - strandat 4040.614 kb on + strandat 4040.614 kb on + strandat 4040.614 kb on + strandat 4040.615 kb on - strandat 4040.741 kb on + strandat 4040.744 kb on - strandat 4041.109 kb on + strand, within CA264_17335at 4041.113 kb on + strand, within CA264_17335at 4041.114 kb on - strand, within CA264_17335at 4041.159 kb on - strand, within CA264_17335at 4041.200 kb on - strand, within CA264_17335at 4041.209 kb on + strand, within CA264_17335at 4041.210 kb on - strand, within CA264_17335at 4041.246 kb on + strand, within CA264_17335at 4041.246 kb on + strand, within CA264_17335at 4041.247 kb on - strand, within CA264_17335at 4041.326 kb on - strand, within CA264_17335at 4041.326 kb on - strand, within CA264_17335at 4041.328 kb on - strand, within CA264_17335at 4041.328 kb on - strand, within CA264_17335at 4041.328 kb on - strand, within CA264_17335

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,039,646 + +0.1
4,039,678 + +1.3
4,039,692 + +2.1
4,039,693 - +1.1
4,039,694 + +0.9
4,039,717 + +2.0
4,039,720 + +2.2
4,039,721 - +1.9
4,039,742 - +2.7
4,039,742 - +1.7
4,039,749 - +0.7
4,039,769 + +1.1
4,040,410 + -1.4
4,040,410 + -0.5
4,040,410 + -1.8
4,040,427 - -1.8
4,040,490 + -0.0
4,040,523 + +0.3
4,040,532 - -1.1
4,040,560 + +1.0
4,040,560 + +1.0
4,040,573 - -0.2
4,040,573 - +0.2
4,040,575 - +0.8
4,040,614 + +1.2
4,040,614 + +0.6
4,040,614 + +1.0
4,040,615 - +1.6
4,040,741 + +1.1
4,040,744 - -1.2
4,041,109 + CA264_17335 0.48 +0.4
4,041,113 + CA264_17335 0.48 +1.7
4,041,114 - CA264_17335 0.49 -1.8
4,041,159 - CA264_17335 0.56 -0.7
4,041,200 - CA264_17335 0.63 -0.8
4,041,209 + CA264_17335 0.64 -0.3
4,041,210 - CA264_17335 0.64 +0.2
4,041,246 + CA264_17335 0.70 -0.3
4,041,246 + CA264_17335 0.70 -0.7
4,041,247 - CA264_17335 0.70 +0.2
4,041,326 - CA264_17335 0.83 -1.0
4,041,326 - CA264_17335 0.83 +0.3
4,041,328 - CA264_17335 0.84 +0.5
4,041,328 - CA264_17335 0.84 -0.2
4,041,328 - CA264_17335 0.84 -0.6

Or see this region's nucleotide sequence