Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15855

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15845 and CA264_15850 are separated by 186 nucleotidesCA264_15850 and CA264_15855 are separated by 66 nucleotidesCA264_15855 and CA264_15860 are separated by 134 nucleotidesCA264_15860 and CA264_15865 are separated by 15 nucleotides CA264_15845: CA264_15845 - hypothetical protein, at 3,699,131 to 3,699,583 _15845 CA264_15850: CA264_15850 - IclR family transcriptional regulator, at 3,699,770 to 3,700,348 _15850 CA264_15855: CA264_15855 - aminotransferase, at 3,700,415 to 3,701,563 _15855 CA264_15860: CA264_15860 - amidohydrolase, at 3,701,698 to 3,702,477 _15860 CA264_15865: CA264_15865 - helicase, at 3,702,493 to 3,702,852 _15865 Position (kb) 3700 3701 3702Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3699.462 kb on + strand, within CA264_15845at 3699.572 kb on + strandat 3699.573 kb on - strandat 3699.751 kb on - strandat 3699.751 kb on - strandat 3699.992 kb on + strand, within CA264_15850at 3700.137 kb on + strand, within CA264_15850at 3700.141 kb on + strand, within CA264_15850at 3700.152 kb on - strand, within CA264_15850at 3700.206 kb on + strand, within CA264_15850at 3700.223 kb on + strand, within CA264_15850at 3700.223 kb on + strand, within CA264_15850at 3700.224 kb on - strand, within CA264_15850at 3700.224 kb on - strand, within CA264_15850at 3700.311 kb on + strandat 3700.316 kb on + strandat 3700.316 kb on + strandat 3700.317 kb on - strandat 3700.317 kb on - strandat 3700.320 kb on + strandat 3700.342 kb on + strandat 3700.343 kb on - strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.358 kb on + strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.403 kb on + strandat 3700.404 kb on - strandat 3700.404 kb on - strandat 3700.406 kb on + strandat 3700.412 kb on + strandat 3700.412 kb on + strandat 3700.414 kb on + strandat 3700.414 kb on + strandat 3700.419 kb on + strandat 3700.419 kb on + strandat 3700.419 kb on + strandat 3700.551 kb on + strand, within CA264_15855at 3700.655 kb on + strand, within CA264_15855at 3700.686 kb on + strand, within CA264_15855at 3700.729 kb on + strand, within CA264_15855at 3700.730 kb on - strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.823 kb on - strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.827 kb on - strand, within CA264_15855at 3700.827 kb on - strand, within CA264_15855at 3700.827 kb on - strand, within CA264_15855at 3700.873 kb on - strand, within CA264_15855at 3701.018 kb on + strand, within CA264_15855at 3701.018 kb on + strand, within CA264_15855at 3701.019 kb on - strand, within CA264_15855at 3701.019 kb on - strand, within CA264_15855at 3701.051 kb on + strand, within CA264_15855at 3701.200 kb on + strand, within CA264_15855at 3701.234 kb on - strand, within CA264_15855at 3701.265 kb on - strand, within CA264_15855at 3701.341 kb on + strand, within CA264_15855at 3701.342 kb on - strand, within CA264_15855at 3701.344 kb on - strand, within CA264_15855at 3701.361 kb on - strand, within CA264_15855at 3701.361 kb on - strand, within CA264_15855at 3701.378 kb on + strand, within CA264_15855at 3701.378 kb on - strand, within CA264_15855at 3701.379 kb on - strand, within CA264_15855at 3701.379 kb on - strand, within CA264_15855at 3701.386 kb on + strand, within CA264_15855at 3701.389 kb on + strand, within CA264_15855at 3701.400 kb on - strand, within CA264_15855at 3701.608 kb on - strandat 3701.637 kb on + strandat 3701.638 kb on - strandat 3701.723 kb on + strandat 3701.723 kb on + strandat 3701.969 kb on - strand, within CA264_15860at 3702.017 kb on - strand, within CA264_15860at 3702.057 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.063 kb on + strand, within CA264_15860at 3702.063 kb on + strand, within CA264_15860at 3702.064 kb on - strand, within CA264_15860at 3702.173 kb on - strand, within CA264_15860at 3702.188 kb on - strand, within CA264_15860at 3702.333 kb on + strand, within CA264_15860at 3702.334 kb on - strand, within CA264_15860at 3702.374 kb on + strand, within CA264_15860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,699,462 + CA264_15845 0.73 +0.8
3,699,572 + -0.0
3,699,573 - -0.2
3,699,751 - -0.8
3,699,751 - +1.6
3,699,992 + CA264_15850 0.38 +0.8
3,700,137 + CA264_15850 0.63 -0.2
3,700,141 + CA264_15850 0.64 +0.1
3,700,152 - CA264_15850 0.66 +0.5
3,700,206 + CA264_15850 0.75 +0.3
3,700,223 + CA264_15850 0.78 +0.5
3,700,223 + CA264_15850 0.78 -0.7
3,700,224 - CA264_15850 0.78 +0.8
3,700,224 - CA264_15850 0.78 -0.1
3,700,311 + -1.5
3,700,316 + +0.8
3,700,316 + +0.3
3,700,317 - +0.6
3,700,317 - -0.2
3,700,320 + -0.4
3,700,342 + +0.0
3,700,343 - -0.3
3,700,356 + -0.3
3,700,356 + -0.2
3,700,356 + -1.1
3,700,356 + -0.6
3,700,356 + +0.0
3,700,357 - -0.5
3,700,357 - -0.2
3,700,357 - -0.4
3,700,357 - +0.5
3,700,357 - -0.3
3,700,358 + -0.0
3,700,359 - -0.9
3,700,359 - -0.6
3,700,359 - -0.7
3,700,359 - +0.4
3,700,403 + -0.1
3,700,404 - +0.1
3,700,404 - -0.7
3,700,406 + +0.1
3,700,412 + +1.4
3,700,412 + -0.6
3,700,414 + -0.7
3,700,414 + +0.1
3,700,419 + +0.3
3,700,419 + -0.3
3,700,419 + -0.6
3,700,551 + CA264_15855 0.12 +0.8
3,700,655 + CA264_15855 0.21 +0.2
3,700,686 + CA264_15855 0.24 -0.0
3,700,729 + CA264_15855 0.27 -0.0
3,700,730 - CA264_15855 0.27 -1.8
3,700,787 + CA264_15855 0.32 +0.8
3,700,787 + CA264_15855 0.32 -0.9
3,700,787 + CA264_15855 0.32 -1.2
3,700,787 + CA264_15855 0.32 -0.7
3,700,823 - CA264_15855 0.36 -0.1
3,700,826 + CA264_15855 0.36 +0.1
3,700,826 + CA264_15855 0.36 -0.1
3,700,826 + CA264_15855 0.36 +0.1
3,700,826 + CA264_15855 0.36 -0.5
3,700,827 - CA264_15855 0.36 -0.5
3,700,827 - CA264_15855 0.36 +0.4
3,700,827 - CA264_15855 0.36 +1.3
3,700,873 - CA264_15855 0.40 +1.3
3,701,018 + CA264_15855 0.52 -0.4
3,701,018 + CA264_15855 0.52 -0.2
3,701,019 - CA264_15855 0.53 +0.4
3,701,019 - CA264_15855 0.53 +1.5
3,701,051 + CA264_15855 0.55 -0.4
3,701,200 + CA264_15855 0.68 -0.3
3,701,234 - CA264_15855 0.71 +2.2
3,701,265 - CA264_15855 0.74 +0.6
3,701,341 + CA264_15855 0.81 +2.0
3,701,342 - CA264_15855 0.81 -0.4
3,701,344 - CA264_15855 0.81 -3.0
3,701,361 - CA264_15855 0.82 +0.4
3,701,361 - CA264_15855 0.82 +0.2
3,701,378 + CA264_15855 0.84 +1.6
3,701,378 - CA264_15855 0.84 -0.7
3,701,379 - CA264_15855 0.84 -0.8
3,701,379 - CA264_15855 0.84 +0.5
3,701,386 + CA264_15855 0.85 +0.6
3,701,389 + CA264_15855 0.85 -0.5
3,701,400 - CA264_15855 0.86 -1.1
3,701,608 - -0.2
3,701,637 + -1.1
3,701,638 - -0.2
3,701,723 + -0.1
3,701,723 + +1.2
3,701,969 - CA264_15860 0.35 -0.4
3,702,017 - CA264_15860 0.41 -0.3
3,702,057 + CA264_15860 0.46 +0.2
3,702,061 + CA264_15860 0.47 -0.2
3,702,061 + CA264_15860 0.47 -1.6
3,702,061 + CA264_15860 0.47 -0.2
3,702,061 + CA264_15860 0.47 +0.0
3,702,063 + CA264_15860 0.47 -2.4
3,702,063 + CA264_15860 0.47 -0.9
3,702,064 - CA264_15860 0.47 -0.6
3,702,173 - CA264_15860 0.61 -1.3
3,702,188 - CA264_15860 0.63 -0.5
3,702,333 + CA264_15860 0.81 +0.6
3,702,334 - CA264_15860 0.82 -1.7
3,702,374 + CA264_15860 0.87 -0.9

Or see this region's nucleotide sequence