Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14965

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14955 and CA264_14960 are separated by 81 nucleotidesCA264_14960 and CA264_14965 are separated by 249 nucleotidesCA264_14965 and CA264_14970 are separated by 92 nucleotides CA264_14955: CA264_14955 - endonuclease III, at 3,510,823 to 3,511,509 _14955 CA264_14960: CA264_14960 - hypothetical protein, at 3,511,591 to 3,512,070 _14960 CA264_14965: CA264_14965 - glycosyltransferase WbuB, at 3,512,320 to 3,513,516 _14965 CA264_14970: CA264_14970 - gliding motility lipoprotein GldB, at 3,513,609 to 3,514,613 _14970 Position (kb) 3512 3513 3514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3511.489 kb on - strandat 3511.580 kb on - strandat 3511.615 kb on - strandat 3511.654 kb on - strand, within CA264_14960at 3511.821 kb on + strand, within CA264_14960at 3511.970 kb on - strand, within CA264_14960at 3512.030 kb on - strandat 3512.053 kb on + strandat 3512.053 kb on + strandat 3512.054 kb on - strandat 3512.079 kb on - strandat 3512.086 kb on + strandat 3512.087 kb on - strandat 3512.091 kb on - strandat 3512.202 kb on - strandat 3512.461 kb on + strand, within CA264_14965at 3512.462 kb on - strand, within CA264_14965at 3512.490 kb on + strand, within CA264_14965at 3512.492 kb on + strand, within CA264_14965at 3512.492 kb on + strand, within CA264_14965at 3512.493 kb on - strand, within CA264_14965at 3512.640 kb on + strand, within CA264_14965at 3512.652 kb on + strand, within CA264_14965at 3512.661 kb on + strand, within CA264_14965at 3512.661 kb on + strand, within CA264_14965at 3512.662 kb on - strand, within CA264_14965at 3512.662 kb on - strand, within CA264_14965at 3512.741 kb on + strand, within CA264_14965at 3512.772 kb on + strand, within CA264_14965at 3512.773 kb on - strand, within CA264_14965at 3512.773 kb on - strand, within CA264_14965at 3512.773 kb on - strand, within CA264_14965at 3512.778 kb on + strand, within CA264_14965at 3512.809 kb on + strand, within CA264_14965at 3512.809 kb on + strand, within CA264_14965at 3512.818 kb on + strand, within CA264_14965at 3512.818 kb on + strand, within CA264_14965at 3512.818 kb on + strand, within CA264_14965at 3512.819 kb on - strand, within CA264_14965at 3512.819 kb on - strand, within CA264_14965at 3512.819 kb on - strand, within CA264_14965at 3512.820 kb on + strand, within CA264_14965at 3512.820 kb on + strand, within CA264_14965at 3512.821 kb on - strand, within CA264_14965at 3512.837 kb on + strand, within CA264_14965at 3512.849 kb on + strand, within CA264_14965at 3512.981 kb on - strand, within CA264_14965at 3512.981 kb on - strand, within CA264_14965at 3513.042 kb on - strand, within CA264_14965at 3513.232 kb on - strand, within CA264_14965at 3513.253 kb on - strand, within CA264_14965at 3513.317 kb on + strand, within CA264_14965at 3513.452 kb on + strandat 3513.579 kb on - strandat 3513.579 kb on - strandat 3513.579 kb on - strandat 3513.630 kb on - strandat 3513.631 kb on + strandat 3513.675 kb on + strandat 3513.675 kb on + strandat 3513.834 kb on + strand, within CA264_14970at 3513.849 kb on + strand, within CA264_14970at 3513.879 kb on - strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.918 kb on - strand, within CA264_14970at 3513.918 kb on - strand, within CA264_14970at 3513.922 kb on + strand, within CA264_14970at 3513.923 kb on - strand, within CA264_14970at 3513.962 kb on - strand, within CA264_14970at 3513.962 kb on - strand, within CA264_14970at 3513.964 kb on + strand, within CA264_14970at 3513.975 kb on + strand, within CA264_14970at 3514.094 kb on - strand, within CA264_14970at 3514.099 kb on + strand, within CA264_14970at 3514.115 kb on - strand, within CA264_14970at 3514.118 kb on + strand, within CA264_14970at 3514.118 kb on + strand, within CA264_14970at 3514.247 kb on - strand, within CA264_14970at 3514.254 kb on + strand, within CA264_14970at 3514.254 kb on + strand, within CA264_14970at 3514.255 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.401 kb on - strand, within CA264_14970at 3514.401 kb on - strand, within CA264_14970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
3,511,489 - +0.7
3,511,580 - +0.5
3,511,615 - -0.9
3,511,654 - CA264_14960 0.13 -0.5
3,511,821 + CA264_14960 0.48 -1.9
3,511,970 - CA264_14960 0.79 -1.0
3,512,030 - -1.3
3,512,053 + +0.4
3,512,053 + +0.3
3,512,054 - +0.2
3,512,079 - -1.2
3,512,086 + +0.3
3,512,087 - +0.8
3,512,091 - -1.7
3,512,202 - -0.5
3,512,461 + CA264_14965 0.12 +1.7
3,512,462 - CA264_14965 0.12 +1.5
3,512,490 + CA264_14965 0.14 +1.5
3,512,492 + CA264_14965 0.14 +1.6
3,512,492 + CA264_14965 0.14 +2.2
3,512,493 - CA264_14965 0.14 +1.1
3,512,640 + CA264_14965 0.27 +1.7
3,512,652 + CA264_14965 0.28 +2.0
3,512,661 + CA264_14965 0.28 +1.7
3,512,661 + CA264_14965 0.28 +2.0
3,512,662 - CA264_14965 0.29 +1.4
3,512,662 - CA264_14965 0.29 +1.8
3,512,741 + CA264_14965 0.35 +2.4
3,512,772 + CA264_14965 0.38 +1.4
3,512,773 - CA264_14965 0.38 +1.3
3,512,773 - CA264_14965 0.38 +1.8
3,512,773 - CA264_14965 0.38 +1.1
3,512,778 + CA264_14965 0.38 +1.7
3,512,809 + CA264_14965 0.41 +2.0
3,512,809 + CA264_14965 0.41 +1.7
3,512,818 + CA264_14965 0.42 +1.4
3,512,818 + CA264_14965 0.42 +1.3
3,512,818 + CA264_14965 0.42 +2.1
3,512,819 - CA264_14965 0.42 +1.2
3,512,819 - CA264_14965 0.42 +1.8
3,512,819 - CA264_14965 0.42 +1.3
3,512,820 + CA264_14965 0.42 +1.6
3,512,820 + CA264_14965 0.42 +1.5
3,512,821 - CA264_14965 0.42 +1.0
3,512,837 + CA264_14965 0.43 +2.3
3,512,849 + CA264_14965 0.44 +1.3
3,512,981 - CA264_14965 0.55 +2.1
3,512,981 - CA264_14965 0.55 +2.0
3,513,042 - CA264_14965 0.60 +1.3
3,513,232 - CA264_14965 0.76 +0.9
3,513,253 - CA264_14965 0.78 +2.7
3,513,317 + CA264_14965 0.83 +2.2
3,513,452 + +1.0
3,513,579 - +1.3
3,513,579 - +3.0
3,513,579 - +1.7
3,513,630 - -0.4
3,513,631 + -1.8
3,513,675 + +1.4
3,513,675 + -1.0
3,513,834 + CA264_14970 0.22 -1.7
3,513,849 + CA264_14970 0.24 -0.4
3,513,879 - CA264_14970 0.27 -1.7
3,513,917 + CA264_14970 0.31 -0.8
3,513,917 + CA264_14970 0.31 +0.8
3,513,917 + CA264_14970 0.31 -0.9
3,513,917 + CA264_14970 0.31 -0.4
3,513,918 - CA264_14970 0.31 +0.3
3,513,918 - CA264_14970 0.31 -0.3
3,513,922 + CA264_14970 0.31 +0.9
3,513,923 - CA264_14970 0.31 +0.4
3,513,962 - CA264_14970 0.35 -0.9
3,513,962 - CA264_14970 0.35 +0.9
3,513,964 + CA264_14970 0.35 +0.0
3,513,975 + CA264_14970 0.36 -0.1
3,514,094 - CA264_14970 0.48 -0.0
3,514,099 + CA264_14970 0.49 +1.0
3,514,115 - CA264_14970 0.50 +0.2
3,514,118 + CA264_14970 0.51 +0.1
3,514,118 + CA264_14970 0.51 -0.9
3,514,247 - CA264_14970 0.63 +1.1
3,514,254 + CA264_14970 0.64 +2.7
3,514,254 + CA264_14970 0.64 +0.7
3,514,255 - CA264_14970 0.64 -1.1
3,514,397 - CA264_14970 0.78 +0.3
3,514,397 - CA264_14970 0.78 +0.2
3,514,397 - CA264_14970 0.78 -0.2
3,514,397 - CA264_14970 0.78 -0.5
3,514,401 - CA264_14970 0.79 -0.2
3,514,401 - CA264_14970 0.79 -2.4

Or see this region's nucleotide sequence