Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14185

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14175 and CA264_14180 are separated by 138 nucleotidesCA264_14180 and CA264_14185 are separated by 139 nucleotidesCA264_14185 and CA264_14190 are separated by 74 nucleotidesCA264_14190 and CA264_14195 are separated by 369 nucleotides CA264_14175: CA264_14175 - hypothetical protein, at 3,329,432 to 3,330,058 _14175 CA264_14180: CA264_14180 - transcriptional regulator, at 3,330,197 to 3,330,583 _14180 CA264_14185: CA264_14185 - noncanonical pyrimidine nucleotidase, YjjG family, at 3,330,723 to 3,331,424 _14185 CA264_14190: CA264_14190 - hypothetical protein, at 3,331,499 to 3,331,918 _14190 CA264_14195: CA264_14195 - 1-pyrroline-5-carboxylate dehydrogenase, at 3,332,288 to 3,333,922 _14195 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3329.761 kb on + strand, within CA264_14175at 3329.762 kb on - strand, within CA264_14175at 3329.769 kb on + strand, within CA264_14175at 3329.769 kb on + strand, within CA264_14175at 3329.784 kb on + strand, within CA264_14175at 3329.831 kb on - strand, within CA264_14175at 3329.877 kb on + strand, within CA264_14175at 3329.917 kb on - strand, within CA264_14175at 3330.076 kb on + strandat 3330.110 kb on - strandat 3330.115 kb on - strandat 3330.120 kb on + strandat 3330.121 kb on - strandat 3330.121 kb on - strandat 3330.141 kb on - strandat 3330.185 kb on + strandat 3330.186 kb on - strandat 3330.190 kb on - strandat 3330.196 kb on + strandat 3330.419 kb on + strand, within CA264_14180at 3330.419 kb on + strand, within CA264_14180at 3330.420 kb on - strand, within CA264_14180at 3330.420 kb on - strand, within CA264_14180at 3330.422 kb on + strand, within CA264_14180at 3330.422 kb on + strand, within CA264_14180at 3330.423 kb on - strand, within CA264_14180at 3330.423 kb on - strand, within CA264_14180at 3330.513 kb on - strand, within CA264_14180at 3330.519 kb on + strand, within CA264_14180at 3330.582 kb on - strandat 3330.606 kb on - strandat 3330.606 kb on - strandat 3330.606 kb on - strandat 3330.633 kb on + strandat 3330.633 kb on + strandat 3330.634 kb on - strandat 3330.634 kb on - strandat 3330.700 kb on + strandat 3330.701 kb on - strandat 3330.733 kb on - strandat 3330.733 kb on - strandat 3330.803 kb on + strand, within CA264_14185at 3330.803 kb on + strand, within CA264_14185at 3330.827 kb on + strand, within CA264_14185at 3330.828 kb on - strand, within CA264_14185at 3330.862 kb on - strand, within CA264_14185at 3330.862 kb on - strand, within CA264_14185at 3330.870 kb on + strand, within CA264_14185at 3330.870 kb on + strand, within CA264_14185at 3330.871 kb on - strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.873 kb on - strand, within CA264_14185at 3330.903 kb on + strand, within CA264_14185at 3330.905 kb on + strand, within CA264_14185at 3330.905 kb on + strand, within CA264_14185at 3330.905 kb on + strand, within CA264_14185at 3330.906 kb on - strand, within CA264_14185at 3330.906 kb on - strand, within CA264_14185at 3331.045 kb on + strand, within CA264_14185at 3331.075 kb on - strand, within CA264_14185at 3331.089 kb on + strand, within CA264_14185at 3331.107 kb on - strand, within CA264_14185at 3331.107 kb on - strand, within CA264_14185at 3331.202 kb on + strand, within CA264_14185at 3331.202 kb on + strand, within CA264_14185at 3331.203 kb on - strand, within CA264_14185at 3331.288 kb on - strand, within CA264_14185at 3331.299 kb on - strand, within CA264_14185at 3331.300 kb on + strand, within CA264_14185at 3331.301 kb on - strand, within CA264_14185at 3331.333 kb on + strand, within CA264_14185at 3331.383 kb on + strandat 3331.383 kb on + strandat 3331.408 kb on + strandat 3331.408 kb on + strandat 3331.409 kb on - strandat 3331.409 kb on - strandat 3331.465 kb on - strandat 3331.500 kb on + strandat 3331.501 kb on - strandat 3331.501 kb on - strandat 3331.555 kb on + strand, within CA264_14190at 3331.610 kb on - strand, within CA264_14190at 3331.718 kb on - strand, within CA264_14190at 3331.720 kb on - strand, within CA264_14190at 3331.747 kb on - strand, within CA264_14190at 3331.834 kb on + strand, within CA264_14190at 3331.834 kb on + strand, within CA264_14190at 3331.834 kb on + strand, within CA264_14190at 3331.896 kb on + strandat 3331.919 kb on - strandat 3331.970 kb on + strandat 3331.970 kb on + strandat 3331.971 kb on - strandat 3331.985 kb on + strandat 3332.006 kb on + strandat 3332.216 kb on + strandat 3332.216 kb on + strandat 3332.216 kb on + strandat 3332.216 kb on + strandat 3332.217 kb on - strandat 3332.217 kb on - strandat 3332.240 kb on - strandat 3332.245 kb on + strandat 3332.245 kb on + strandat 3332.246 kb on - strandat 3332.246 kb on - strandat 3332.275 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.281 kb on - strandat 3332.285 kb on + strandat 3332.285 kb on + strandat 3332.310 kb on + strandat 3332.423 kb on + strandat 3332.423 kb on + strandat 3332.424 kb on - strandat 3332.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,329,761 + CA264_14175 0.52 -0.8
3,329,762 - CA264_14175 0.53 +1.9
3,329,769 + CA264_14175 0.54 -0.8
3,329,769 + CA264_14175 0.54 +0.0
3,329,784 + CA264_14175 0.56 -0.4
3,329,831 - CA264_14175 0.64 -1.1
3,329,877 + CA264_14175 0.71 -0.2
3,329,917 - CA264_14175 0.77 -0.7
3,330,076 + +0.1
3,330,110 - -0.9
3,330,115 - +0.9
3,330,120 + +0.6
3,330,121 - -0.4
3,330,121 - +0.5
3,330,141 - +0.6
3,330,185 + -0.1
3,330,186 - +0.2
3,330,190 - +0.9
3,330,196 + +0.4
3,330,419 + CA264_14180 0.57 +2.0
3,330,419 + CA264_14180 0.57 +0.3
3,330,420 - CA264_14180 0.58 +2.1
3,330,420 - CA264_14180 0.58 +1.1
3,330,422 + CA264_14180 0.58 +0.5
3,330,422 + CA264_14180 0.58 +1.6
3,330,423 - CA264_14180 0.58 +2.1
3,330,423 - CA264_14180 0.58 +1.7
3,330,513 - CA264_14180 0.82 +0.7
3,330,519 + CA264_14180 0.83 +1.1
3,330,582 - +1.1
3,330,606 - +0.3
3,330,606 - +1.4
3,330,606 - +0.6
3,330,633 + -0.5
3,330,633 + +0.4
3,330,634 - +1.3
3,330,634 - -0.8
3,330,700 + -0.3
3,330,701 - +1.2
3,330,733 - +1.1
3,330,733 - +1.4
3,330,803 + CA264_14185 0.11 -0.6
3,330,803 + CA264_14185 0.11 -0.1
3,330,827 + CA264_14185 0.15 -0.4
3,330,828 - CA264_14185 0.15 +0.5
3,330,862 - CA264_14185 0.20 +2.0
3,330,862 - CA264_14185 0.20 +1.2
3,330,870 + CA264_14185 0.21 +1.6
3,330,870 + CA264_14185 0.21 -1.3
3,330,871 - CA264_14185 0.21 +0.8
3,330,872 + CA264_14185 0.21 -0.2
3,330,872 + CA264_14185 0.21 +0.4
3,330,872 + CA264_14185 0.21 +0.3
3,330,872 + CA264_14185 0.21 -0.3
3,330,873 - CA264_14185 0.21 -0.5
3,330,903 + CA264_14185 0.26 +0.7
3,330,905 + CA264_14185 0.26 +0.1
3,330,905 + CA264_14185 0.26 -1.1
3,330,905 + CA264_14185 0.26 +0.6
3,330,906 - CA264_14185 0.26 +0.4
3,330,906 - CA264_14185 0.26 +0.7
3,331,045 + CA264_14185 0.46 +0.5
3,331,075 - CA264_14185 0.50 +1.0
3,331,089 + CA264_14185 0.52 +2.3
3,331,107 - CA264_14185 0.55 +0.7
3,331,107 - CA264_14185 0.55 +2.2
3,331,202 + CA264_14185 0.68 -1.5
3,331,202 + CA264_14185 0.68 +0.5
3,331,203 - CA264_14185 0.68 +1.1
3,331,288 - CA264_14185 0.80 +0.5
3,331,299 - CA264_14185 0.82 +0.8
3,331,300 + CA264_14185 0.82 +0.1
3,331,301 - CA264_14185 0.82 +0.5
3,331,333 + CA264_14185 0.87 -1.1
3,331,383 + -1.8
3,331,383 + +0.9
3,331,408 + +0.2
3,331,408 + -1.2
3,331,409 - +0.5
3,331,409 - +0.7
3,331,465 - +0.4
3,331,500 + -0.7
3,331,501 - +0.5
3,331,501 - -0.7
3,331,555 + CA264_14190 0.13 -2.9
3,331,610 - CA264_14190 0.26 -0.6
3,331,718 - CA264_14190 0.52 +0.3
3,331,720 - CA264_14190 0.53 -0.9
3,331,747 - CA264_14190 0.59 +1.5
3,331,834 + CA264_14190 0.80 -0.9
3,331,834 + CA264_14190 0.80 +0.1
3,331,834 + CA264_14190 0.80 -0.6
3,331,896 + +0.6
3,331,919 - +0.0
3,331,970 + -0.5
3,331,970 + -1.5
3,331,971 - +0.3
3,331,985 + +0.9
3,332,006 + +0.8
3,332,216 + +0.5
3,332,216 + -0.6
3,332,216 + +0.1
3,332,216 + -0.1
3,332,217 - +1.5
3,332,217 - +1.3
3,332,240 - +0.5
3,332,245 + -0.2
3,332,245 + +1.2
3,332,246 - -0.9
3,332,246 - +0.4
3,332,275 - +1.6
3,332,279 - +1.0
3,332,279 - +1.0
3,332,279 - +0.9
3,332,279 - +1.1
3,332,279 - +0.6
3,332,279 - +1.7
3,332,281 - +0.3
3,332,285 + +0.2
3,332,285 + +1.1
3,332,310 + +0.9
3,332,423 + -0.4
3,332,423 + +0.2
3,332,424 - +1.1
3,332,424 - +1.3

Or see this region's nucleotide sequence