Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14005

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14000 and CA264_14005 are separated by 66 nucleotidesCA264_14005 and CA264_14010 are separated by 128 nucleotides CA264_14000: CA264_14000 - xylose isomerase, at 3,277,489 to 3,278,820 _14000 CA264_14005: CA264_14005 - D-xylose transporter XylE, at 3,278,887 to 3,280,299 _14005 CA264_14010: CA264_14010 - carbohydrate kinase, at 3,280,428 to 3,281,459 _14010 Position (kb) 3278 3279 3280 3281Strain fitness (log2 ratio) -2 -1 0 1 2at 3277.958 kb on - strand, within CA264_14000at 3278.063 kb on - strand, within CA264_14000at 3278.063 kb on - strand, within CA264_14000at 3278.089 kb on + strand, within CA264_14000at 3278.090 kb on - strand, within CA264_14000at 3278.164 kb on + strand, within CA264_14000at 3278.165 kb on - strand, within CA264_14000at 3278.279 kb on - strand, within CA264_14000at 3278.570 kb on - strand, within CA264_14000at 3278.768 kb on + strandat 3278.769 kb on - strandat 3278.789 kb on - strandat 3278.812 kb on + strandat 3278.812 kb on + strandat 3278.818 kb on + strandat 3278.818 kb on + strandat 3278.819 kb on - strandat 3278.834 kb on + strandat 3278.839 kb on + strandat 3278.900 kb on - strandat 3279.103 kb on - strand, within CA264_14005at 3279.201 kb on - strand, within CA264_14005at 3279.228 kb on + strand, within CA264_14005at 3279.244 kb on + strand, within CA264_14005at 3279.245 kb on - strand, within CA264_14005at 3279.245 kb on - strand, within CA264_14005at 3279.343 kb on + strand, within CA264_14005at 3279.343 kb on + strand, within CA264_14005at 3279.380 kb on + strand, within CA264_14005at 3279.681 kb on - strand, within CA264_14005at 3279.697 kb on + strand, within CA264_14005at 3279.697 kb on + strand, within CA264_14005at 3279.698 kb on - strand, within CA264_14005at 3279.698 kb on - strand, within CA264_14005at 3279.803 kb on + strand, within CA264_14005at 3279.803 kb on + strand, within CA264_14005at 3279.803 kb on + strand, within CA264_14005at 3279.803 kb on + strand, within CA264_14005at 3279.804 kb on - strand, within CA264_14005at 3279.804 kb on - strand, within CA264_14005at 3279.808 kb on - strand, within CA264_14005at 3279.808 kb on - strand, within CA264_14005at 3279.844 kb on + strand, within CA264_14005at 3279.874 kb on - strand, within CA264_14005at 3279.940 kb on + strand, within CA264_14005at 3280.167 kb on - strandat 3280.295 kb on + strandat 3280.295 kb on + strandat 3280.296 kb on - strandat 3280.296 kb on - strandat 3280.296 kb on - strandat 3280.297 kb on + strandat 3280.297 kb on + strandat 3280.424 kb on - strandat 3280.426 kb on - strandat 3280.445 kb on - strandat 3280.590 kb on + strand, within CA264_14010at 3280.595 kb on + strand, within CA264_14010at 3280.595 kb on + strand, within CA264_14010at 3280.702 kb on - strand, within CA264_14010at 3280.702 kb on - strand, within CA264_14010at 3280.746 kb on + strand, within CA264_14010at 3280.747 kb on - strand, within CA264_14010at 3280.752 kb on - strand, within CA264_14010at 3280.818 kb on + strand, within CA264_14010at 3280.818 kb on + strand, within CA264_14010at 3280.960 kb on - strand, within CA264_14010at 3280.960 kb on - strand, within CA264_14010at 3281.132 kb on - strand, within CA264_14010at 3281.180 kb on + strand, within CA264_14010at 3281.217 kb on + strand, within CA264_14010at 3281.218 kb on - strand, within CA264_14010

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,277,958 - CA264_14000 0.35 -0.4
3,278,063 - CA264_14000 0.43 +1.7
3,278,063 - CA264_14000 0.43 -0.9
3,278,089 + CA264_14000 0.45 -1.1
3,278,090 - CA264_14000 0.45 -0.5
3,278,164 + CA264_14000 0.51 +0.6
3,278,165 - CA264_14000 0.51 +1.1
3,278,279 - CA264_14000 0.59 +1.5
3,278,570 - CA264_14000 0.81 -1.1
3,278,768 + -1.2
3,278,769 - -0.2
3,278,789 - -0.6
3,278,812 + -0.1
3,278,812 + -0.1
3,278,818 + -2.1
3,278,818 + -1.0
3,278,819 - -0.1
3,278,834 + -0.3
3,278,839 + -1.2
3,278,900 - -0.1
3,279,103 - CA264_14005 0.15 -1.0
3,279,201 - CA264_14005 0.22 +1.0
3,279,228 + CA264_14005 0.24 +1.3
3,279,244 + CA264_14005 0.25 -1.2
3,279,245 - CA264_14005 0.25 +0.6
3,279,245 - CA264_14005 0.25 -0.0
3,279,343 + CA264_14005 0.32 -0.7
3,279,343 + CA264_14005 0.32 -1.3
3,279,380 + CA264_14005 0.35 -0.2
3,279,681 - CA264_14005 0.56 +0.1
3,279,697 + CA264_14005 0.57 -1.9
3,279,697 + CA264_14005 0.57 -0.3
3,279,698 - CA264_14005 0.57 -0.4
3,279,698 - CA264_14005 0.57 +0.5
3,279,803 + CA264_14005 0.65 -0.5
3,279,803 + CA264_14005 0.65 -1.6
3,279,803 + CA264_14005 0.65 -1.3
3,279,803 + CA264_14005 0.65 -0.6
3,279,804 - CA264_14005 0.65 -2.0
3,279,804 - CA264_14005 0.65 +1.2
3,279,808 - CA264_14005 0.65 +0.2
3,279,808 - CA264_14005 0.65 +1.8
3,279,844 + CA264_14005 0.68 -0.4
3,279,874 - CA264_14005 0.70 -0.5
3,279,940 + CA264_14005 0.75 +0.9
3,280,167 - +0.9
3,280,295 + +0.2
3,280,295 + -0.5
3,280,296 - +0.3
3,280,296 - -0.2
3,280,296 - -0.8
3,280,297 + -0.3
3,280,297 + -0.8
3,280,424 - +0.4
3,280,426 - -0.4
3,280,445 - +0.5
3,280,590 + CA264_14010 0.16 -0.3
3,280,595 + CA264_14010 0.16 +0.9
3,280,595 + CA264_14010 0.16 -0.9
3,280,702 - CA264_14010 0.27 -0.4
3,280,702 - CA264_14010 0.27 -0.6
3,280,746 + CA264_14010 0.31 -0.1
3,280,747 - CA264_14010 0.31 -0.7
3,280,752 - CA264_14010 0.31 -0.1
3,280,818 + CA264_14010 0.38 -0.4
3,280,818 + CA264_14010 0.38 +0.1
3,280,960 - CA264_14010 0.52 +0.3
3,280,960 - CA264_14010 0.52 -0.6
3,281,132 - CA264_14010 0.68 +0.3
3,281,180 + CA264_14010 0.73 -0.2
3,281,217 + CA264_14010 0.76 -1.3
3,281,218 - CA264_14010 0.77 -0.2

Or see this region's nucleotide sequence