Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13425

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13415 and CA264_13420 are separated by 98 nucleotidesCA264_13420 and CA264_13425 are separated by 89 nucleotidesCA264_13425 and CA264_13430 are separated by 124 nucleotidesCA264_13430 and CA264_13435 are separated by 136 nucleotides CA264_13415: CA264_13415 - alpha/beta hydrolase, at 3,129,330 to 3,130,223 _13415 CA264_13420: CA264_13420 - hypothetical protein, at 3,130,322 to 3,130,507 _13420 CA264_13425: CA264_13425 - FAD-binding oxidoreductase, at 3,130,597 to 3,132,000 _13425 CA264_13430: CA264_13430 - hypothetical protein, at 3,132,125 to 3,132,685 _13430 CA264_13435: CA264_13435 - hypothetical protein, at 3,132,822 to 3,135,956 _13435 Position (kb) 3130 3131 3132 3133Strain fitness (log2 ratio) -2 -1 0 1 2at 3129.626 kb on - strand, within CA264_13415at 3129.646 kb on + strand, within CA264_13415at 3129.647 kb on - strand, within CA264_13415at 3129.679 kb on - strand, within CA264_13415at 3129.894 kb on + strand, within CA264_13415at 3129.897 kb on - strand, within CA264_13415at 3130.026 kb on - strand, within CA264_13415at 3130.026 kb on - strand, within CA264_13415at 3130.101 kb on + strand, within CA264_13415at 3130.101 kb on + strand, within CA264_13415at 3130.101 kb on + strand, within CA264_13415at 3130.101 kb on + strand, within CA264_13415at 3130.102 kb on - strand, within CA264_13415at 3130.102 kb on - strand, within CA264_13415at 3130.168 kb on - strandat 3130.214 kb on - strandat 3130.221 kb on + strandat 3130.265 kb on + strandat 3130.266 kb on - strandat 3130.299 kb on + strandat 3130.299 kb on + strandat 3130.302 kb on - strandat 3130.390 kb on + strand, within CA264_13420at 3130.391 kb on - strand, within CA264_13420at 3130.454 kb on + strand, within CA264_13420at 3130.504 kb on - strandat 3130.510 kb on + strandat 3130.510 kb on + strandat 3130.511 kb on - strandat 3130.513 kb on - strandat 3130.524 kb on + strandat 3130.575 kb on + strandat 3130.595 kb on + strandat 3130.622 kb on - strandat 3130.695 kb on + strandat 3130.697 kb on + strandat 3130.697 kb on + strandat 3130.698 kb on - strandat 3130.698 kb on - strandat 3130.829 kb on - strand, within CA264_13425at 3130.888 kb on - strand, within CA264_13425at 3130.890 kb on - strand, within CA264_13425at 3130.890 kb on - strand, within CA264_13425at 3130.967 kb on + strand, within CA264_13425at 3130.967 kb on + strand, within CA264_13425at 3130.971 kb on + strand, within CA264_13425at 3130.997 kb on - strand, within CA264_13425at 3131.012 kb on - strand, within CA264_13425at 3131.088 kb on - strand, within CA264_13425at 3131.088 kb on - strand, within CA264_13425at 3131.158 kb on + strand, within CA264_13425at 3131.159 kb on - strand, within CA264_13425at 3131.159 kb on - strand, within CA264_13425at 3131.354 kb on - strand, within CA264_13425at 3131.414 kb on + strand, within CA264_13425at 3131.495 kb on + strand, within CA264_13425at 3131.495 kb on + strand, within CA264_13425at 3131.495 kb on + strand, within CA264_13425at 3131.496 kb on - strand, within CA264_13425at 3131.506 kb on + strand, within CA264_13425at 3131.713 kb on - strand, within CA264_13425at 3131.719 kb on + strand, within CA264_13425at 3131.719 kb on + strand, within CA264_13425at 3131.720 kb on - strand, within CA264_13425at 3131.720 kb on - strand, within CA264_13425at 3131.721 kb on + strand, within CA264_13425at 3131.721 kb on + strand, within CA264_13425at 3131.814 kb on + strand, within CA264_13425at 3131.814 kb on + strand, within CA264_13425at 3131.815 kb on - strand, within CA264_13425at 3131.818 kb on - strand, within CA264_13425at 3131.838 kb on + strand, within CA264_13425at 3131.929 kb on + strandat 3131.937 kb on - strandat 3131.968 kb on + strandat 3131.968 kb on + strandat 3131.969 kb on - strandat 3132.025 kb on - strandat 3132.029 kb on + strandat 3132.040 kb on + strandat 3132.042 kb on + strandat 3132.042 kb on + strandat 3132.044 kb on + strandat 3132.044 kb on + strandat 3132.044 kb on + strandat 3132.045 kb on - strandat 3132.091 kb on + strandat 3132.092 kb on - strandat 3132.176 kb on + strandat 3132.177 kb on - strandat 3132.295 kb on - strand, within CA264_13430at 3132.318 kb on + strand, within CA264_13430at 3132.336 kb on - strand, within CA264_13430at 3132.419 kb on - strand, within CA264_13430at 3132.552 kb on + strand, within CA264_13430at 3132.588 kb on + strand, within CA264_13430at 3132.589 kb on - strand, within CA264_13430at 3132.643 kb on + strandat 3132.658 kb on - strandat 3132.688 kb on + strandat 3132.719 kb on - strandat 3132.777 kb on - strandat 3132.865 kb on + strandat 3132.865 kb on + strandat 3132.914 kb on + strandat 3132.925 kb on + strandat 3132.996 kb on + strandat 3132.996 kb on + strandat 3132.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,129,626 - CA264_13415 0.33 -1.9
3,129,646 + CA264_13415 0.35 +0.8
3,129,647 - CA264_13415 0.35 -1.0
3,129,679 - CA264_13415 0.39 +0.7
3,129,894 + CA264_13415 0.63 +0.6
3,129,897 - CA264_13415 0.63 +1.0
3,130,026 - CA264_13415 0.78 +0.2
3,130,026 - CA264_13415 0.78 -0.9
3,130,101 + CA264_13415 0.86 -0.1
3,130,101 + CA264_13415 0.86 +0.2
3,130,101 + CA264_13415 0.86 +0.1
3,130,101 + CA264_13415 0.86 +0.7
3,130,102 - CA264_13415 0.86 +0.1
3,130,102 - CA264_13415 0.86 -0.9
3,130,168 - +0.1
3,130,214 - +0.1
3,130,221 + +0.7
3,130,265 + +0.9
3,130,266 - -0.7
3,130,299 + -0.4
3,130,299 + -0.9
3,130,302 - -0.3
3,130,390 + CA264_13420 0.37 -0.8
3,130,391 - CA264_13420 0.37 +0.1
3,130,454 + CA264_13420 0.71 +0.7
3,130,504 - -2.3
3,130,510 + +0.3
3,130,510 + +0.1
3,130,511 - -0.1
3,130,513 - -0.3
3,130,524 + +0.4
3,130,575 + -0.6
3,130,595 + +0.7
3,130,622 - -0.4
3,130,695 + -0.3
3,130,697 + -1.0
3,130,697 + +0.5
3,130,698 - +0.2
3,130,698 - +0.6
3,130,829 - CA264_13425 0.17 +2.2
3,130,888 - CA264_13425 0.21 +0.9
3,130,890 - CA264_13425 0.21 -0.7
3,130,890 - CA264_13425 0.21 -0.8
3,130,967 + CA264_13425 0.26 -0.3
3,130,967 + CA264_13425 0.26 -0.1
3,130,971 + CA264_13425 0.27 -0.6
3,130,997 - CA264_13425 0.28 +0.6
3,131,012 - CA264_13425 0.30 -1.5
3,131,088 - CA264_13425 0.35 -0.1
3,131,088 - CA264_13425 0.35 -0.5
3,131,158 + CA264_13425 0.40 -0.4
3,131,159 - CA264_13425 0.40 +0.6
3,131,159 - CA264_13425 0.40 -0.4
3,131,354 - CA264_13425 0.54 +0.0
3,131,414 + CA264_13425 0.58 +1.3
3,131,495 + CA264_13425 0.64 -0.6
3,131,495 + CA264_13425 0.64 -0.4
3,131,495 + CA264_13425 0.64 +0.3
3,131,496 - CA264_13425 0.64 -0.9
3,131,506 + CA264_13425 0.65 -0.9
3,131,713 - CA264_13425 0.79 -0.3
3,131,719 + CA264_13425 0.80 -1.1
3,131,719 + CA264_13425 0.80 -0.4
3,131,720 - CA264_13425 0.80 -0.8
3,131,720 - CA264_13425 0.80 +0.8
3,131,721 + CA264_13425 0.80 -2.4
3,131,721 + CA264_13425 0.80 +0.2
3,131,814 + CA264_13425 0.87 +1.0
3,131,814 + CA264_13425 0.87 -0.1
3,131,815 - CA264_13425 0.87 -0.7
3,131,818 - CA264_13425 0.87 -0.3
3,131,838 + CA264_13425 0.88 +2.5
3,131,929 + +0.1
3,131,937 - -1.2
3,131,968 + -1.0
3,131,968 + -0.5
3,131,969 - -1.1
3,132,025 - -2.0
3,132,029 + -0.2
3,132,040 + -0.6
3,132,042 + +1.7
3,132,042 + +1.5
3,132,044 + -0.8
3,132,044 + +1.6
3,132,044 + +0.1
3,132,045 - +0.1
3,132,091 + +0.6
3,132,092 - -1.8
3,132,176 + -0.5
3,132,177 - -0.1
3,132,295 - CA264_13430 0.30 -0.6
3,132,318 + CA264_13430 0.34 +0.3
3,132,336 - CA264_13430 0.38 -0.8
3,132,419 - CA264_13430 0.52 -0.4
3,132,552 + CA264_13430 0.76 +0.6
3,132,588 + CA264_13430 0.83 +0.2
3,132,589 - CA264_13430 0.83 +0.0
3,132,643 + -1.6
3,132,658 - -0.4
3,132,688 + +0.4
3,132,719 - +0.1
3,132,777 - -0.1
3,132,865 + +0.6
3,132,865 + -0.2
3,132,914 + +0.7
3,132,925 + -1.1
3,132,996 + -1.4
3,132,996 + +0.2
3,132,997 - -0.7

Or see this region's nucleotide sequence