Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11165

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11160 and CA264_11165 are separated by 1 nucleotidesCA264_11165 and CA264_11170 overlap by 4 nucleotides CA264_11160: CA264_11160 - glycoside hydrolase, at 2,582,345 to 2,584,768 _11160 CA264_11165: CA264_11165 - malto-oligosyltrehalose synthase, at 2,584,770 to 2,587,478 _11165 CA264_11170: CA264_11170 - 4-alpha-glucanotransferase, at 2,587,475 to 2,588,989 _11170 Position (kb) 2584 2585 2586 2587 2588Strain fitness (log2 ratio) -2 -1 0 1 2at 2583.810 kb on - strand, within CA264_11160at 2583.939 kb on - strand, within CA264_11160at 2583.991 kb on + strand, within CA264_11160at 2584.002 kb on + strand, within CA264_11160at 2584.088 kb on + strand, within CA264_11160at 2584.193 kb on + strand, within CA264_11160at 2584.292 kb on + strand, within CA264_11160at 2584.304 kb on + strand, within CA264_11160at 2584.304 kb on + strand, within CA264_11160at 2584.471 kb on - strand, within CA264_11160at 2584.515 kb on + strand, within CA264_11160at 2584.593 kb on + strandat 2584.593 kb on + strandat 2584.594 kb on - strandat 2584.594 kb on - strandat 2584.687 kb on + strandat 2584.690 kb on + strandat 2584.767 kb on - strandat 2584.767 kb on - strandat 2584.769 kb on + strandat 2584.769 kb on + strandat 2584.770 kb on - strandat 2584.770 kb on - strandat 2584.776 kb on + strandat 2584.776 kb on + strandat 2584.795 kb on - strandat 2584.826 kb on - strandat 2584.834 kb on + strandat 2584.835 kb on - strandat 2584.882 kb on - strandat 2584.927 kb on - strandat 2584.933 kb on + strandat 2584.990 kb on + strandat 2585.071 kb on + strand, within CA264_11165at 2585.071 kb on + strand, within CA264_11165at 2585.072 kb on - strand, within CA264_11165at 2585.072 kb on - strand, within CA264_11165at 2585.115 kb on + strand, within CA264_11165at 2585.115 kb on + strand, within CA264_11165at 2585.116 kb on - strand, within CA264_11165at 2585.154 kb on - strand, within CA264_11165at 2585.180 kb on - strand, within CA264_11165at 2585.251 kb on + strand, within CA264_11165at 2585.251 kb on + strand, within CA264_11165at 2585.259 kb on + strand, within CA264_11165at 2585.260 kb on - strand, within CA264_11165at 2585.400 kb on - strand, within CA264_11165at 2585.400 kb on - strand, within CA264_11165at 2585.402 kb on - strand, within CA264_11165at 2585.426 kb on + strand, within CA264_11165at 2585.478 kb on - strand, within CA264_11165at 2585.503 kb on + strand, within CA264_11165at 2585.503 kb on + strand, within CA264_11165at 2585.504 kb on - strand, within CA264_11165at 2585.522 kb on + strand, within CA264_11165at 2585.525 kb on + strand, within CA264_11165at 2585.736 kb on + strand, within CA264_11165at 2585.775 kb on + strand, within CA264_11165at 2585.776 kb on - strand, within CA264_11165at 2585.880 kb on + strand, within CA264_11165at 2585.880 kb on + strand, within CA264_11165at 2585.881 kb on - strand, within CA264_11165at 2585.881 kb on - strand, within CA264_11165at 2585.881 kb on - strand, within CA264_11165at 2585.882 kb on + strand, within CA264_11165at 2585.883 kb on - strand, within CA264_11165at 2585.997 kb on + strand, within CA264_11165at 2585.997 kb on + strand, within CA264_11165at 2585.998 kb on - strand, within CA264_11165at 2586.072 kb on - strand, within CA264_11165at 2586.118 kb on - strand, within CA264_11165at 2586.127 kb on - strand, within CA264_11165at 2586.291 kb on + strand, within CA264_11165at 2586.292 kb on - strand, within CA264_11165at 2586.292 kb on - strand, within CA264_11165at 2586.360 kb on + strand, within CA264_11165at 2586.360 kb on + strand, within CA264_11165at 2586.361 kb on - strand, within CA264_11165at 2586.367 kb on - strand, within CA264_11165at 2586.367 kb on - strand, within CA264_11165at 2586.577 kb on + strand, within CA264_11165at 2586.636 kb on + strand, within CA264_11165at 2586.637 kb on - strand, within CA264_11165at 2586.748 kb on + strand, within CA264_11165at 2586.780 kb on + strand, within CA264_11165at 2586.780 kb on + strand, within CA264_11165at 2586.780 kb on + strand, within CA264_11165at 2586.836 kb on + strand, within CA264_11165at 2586.836 kb on + strand, within CA264_11165at 2586.838 kb on + strand, within CA264_11165at 2586.839 kb on - strand, within CA264_11165at 2586.839 kb on - strand, within CA264_11165at 2587.005 kb on + strand, within CA264_11165at 2587.006 kb on - strand, within CA264_11165at 2587.109 kb on - strand, within CA264_11165at 2587.179 kb on + strand, within CA264_11165at 2587.256 kb on - strandat 2587.261 kb on + strandat 2587.261 kb on + strandat 2587.262 kb on - strandat 2587.262 kb on - strandat 2587.291 kb on + strandat 2587.394 kb on + strandat 2587.400 kb on - strandat 2587.435 kb on + strandat 2587.435 kb on + strandat 2587.566 kb on - strandat 2587.568 kb on - strandat 2587.568 kb on - strandat 2587.698 kb on + strand, within CA264_11170at 2587.916 kb on + strand, within CA264_11170at 2587.917 kb on - strand, within CA264_11170at 2587.947 kb on - strand, within CA264_11170at 2587.983 kb on + strand, within CA264_11170at 2587.984 kb on - strand, within CA264_11170at 2588.135 kb on - strand, within CA264_11170at 2588.144 kb on + strand, within CA264_11170at 2588.244 kb on - strand, within CA264_11170at 2588.397 kb on - strand, within CA264_11170at 2588.470 kb on - strand, within CA264_11170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,583,810 - CA264_11160 0.60 +0.3
2,583,939 - CA264_11160 0.66 +0.2
2,583,991 + CA264_11160 0.68 +1.2
2,584,002 + CA264_11160 0.68 +0.8
2,584,088 + CA264_11160 0.72 +0.7
2,584,193 + CA264_11160 0.76 +1.4
2,584,292 + CA264_11160 0.80 +0.6
2,584,304 + CA264_11160 0.81 +1.0
2,584,304 + CA264_11160 0.81 +1.4
2,584,471 - CA264_11160 0.88 +1.0
2,584,515 + CA264_11160 0.90 +0.6
2,584,593 + -0.4
2,584,593 + +0.4
2,584,594 - +0.7
2,584,594 - +0.2
2,584,687 + +1.0
2,584,690 + +1.1
2,584,767 - +2.2
2,584,767 - -0.4
2,584,769 + +0.5
2,584,769 + -0.1
2,584,770 - -0.7
2,584,770 - -0.1
2,584,776 + +0.2
2,584,776 + +1.1
2,584,795 - +0.5
2,584,826 - -0.2
2,584,834 + -0.6
2,584,835 - +1.0
2,584,882 - -0.4
2,584,927 - -0.6
2,584,933 + -0.3
2,584,990 + -0.1
2,585,071 + CA264_11165 0.11 -0.8
2,585,071 + CA264_11165 0.11 -0.6
2,585,072 - CA264_11165 0.11 -1.6
2,585,072 - CA264_11165 0.11 -0.4
2,585,115 + CA264_11165 0.13 +1.3
2,585,115 + CA264_11165 0.13 +0.5
2,585,116 - CA264_11165 0.13 +0.2
2,585,154 - CA264_11165 0.14 -0.1
2,585,180 - CA264_11165 0.15 +2.7
2,585,251 + CA264_11165 0.18 +0.5
2,585,251 + CA264_11165 0.18 -0.7
2,585,259 + CA264_11165 0.18 +0.2
2,585,260 - CA264_11165 0.18 -0.4
2,585,400 - CA264_11165 0.23 -0.3
2,585,400 - CA264_11165 0.23 -1.7
2,585,402 - CA264_11165 0.23 -0.8
2,585,426 + CA264_11165 0.24 +0.2
2,585,478 - CA264_11165 0.26 -1.2
2,585,503 + CA264_11165 0.27 +0.6
2,585,503 + CA264_11165 0.27 -0.2
2,585,504 - CA264_11165 0.27 +0.7
2,585,522 + CA264_11165 0.28 +0.2
2,585,525 + CA264_11165 0.28 +0.1
2,585,736 + CA264_11165 0.36 -0.1
2,585,775 + CA264_11165 0.37 +1.0
2,585,776 - CA264_11165 0.37 +0.0
2,585,880 + CA264_11165 0.41 -0.6
2,585,880 + CA264_11165 0.41 +1.4
2,585,881 - CA264_11165 0.41 -0.3
2,585,881 - CA264_11165 0.41 -0.7
2,585,881 - CA264_11165 0.41 +0.4
2,585,882 + CA264_11165 0.41 +0.9
2,585,883 - CA264_11165 0.41 -0.6
2,585,997 + CA264_11165 0.45 -0.3
2,585,997 + CA264_11165 0.45 +0.2
2,585,998 - CA264_11165 0.45 -0.5
2,586,072 - CA264_11165 0.48 -1.1
2,586,118 - CA264_11165 0.50 -0.1
2,586,127 - CA264_11165 0.50 +0.2
2,586,291 + CA264_11165 0.56 -0.7
2,586,292 - CA264_11165 0.56 -0.0
2,586,292 - CA264_11165 0.56 -1.0
2,586,360 + CA264_11165 0.59 +0.0
2,586,360 + CA264_11165 0.59 -0.0
2,586,361 - CA264_11165 0.59 +0.5
2,586,367 - CA264_11165 0.59 -0.4
2,586,367 - CA264_11165 0.59 +1.7
2,586,577 + CA264_11165 0.67 -0.8
2,586,636 + CA264_11165 0.69 +0.6
2,586,637 - CA264_11165 0.69 -1.1
2,586,748 + CA264_11165 0.73 -0.8
2,586,780 + CA264_11165 0.74 -0.9
2,586,780 + CA264_11165 0.74 +0.2
2,586,780 + CA264_11165 0.74 +1.4
2,586,836 + CA264_11165 0.76 -0.8
2,586,836 + CA264_11165 0.76 +0.4
2,586,838 + CA264_11165 0.76 -0.0
2,586,839 - CA264_11165 0.76 -0.3
2,586,839 - CA264_11165 0.76 +1.0
2,587,005 + CA264_11165 0.83 +0.3
2,587,006 - CA264_11165 0.83 -0.6
2,587,109 - CA264_11165 0.86 -0.7
2,587,179 + CA264_11165 0.89 -0.0
2,587,256 - -1.2
2,587,261 + -0.6
2,587,261 + +1.4
2,587,262 - -1.8
2,587,262 - -0.2
2,587,291 + +2.7
2,587,394 + +0.1
2,587,400 - +0.4
2,587,435 + +0.3
2,587,435 + +1.7
2,587,566 - +0.3
2,587,568 - +0.7
2,587,568 - +1.1
2,587,698 + CA264_11170 0.15 -0.6
2,587,916 + CA264_11170 0.29 -0.1
2,587,917 - CA264_11170 0.29 +0.3
2,587,947 - CA264_11170 0.31 -0.4
2,587,983 + CA264_11170 0.34 -0.1
2,587,984 - CA264_11170 0.34 +0.3
2,588,135 - CA264_11170 0.44 -0.6
2,588,144 + CA264_11170 0.44 -0.5
2,588,244 - CA264_11170 0.51 +0.6
2,588,397 - CA264_11170 0.61 -0.3
2,588,470 - CA264_11170 0.66 +0.3

Or see this region's nucleotide sequence