Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10715

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10705 and CA264_10710 are separated by 32 nucleotidesCA264_10710 and CA264_10715 are separated by 333 nucleotidesCA264_10715 and CA264_10720 are separated by 59 nucleotides CA264_10705: CA264_10705 - histidine kinase, at 2,470,217 to 2,471,572 _10705 CA264_10710: CA264_10710 - response regulator, at 2,471,605 to 2,472,054 _10710 CA264_10715: CA264_10715 - hypothetical protein, at 2,472,388 to 2,472,684 _10715 CA264_10720: CA264_10720 - phenylacetic acid degradation protein PaaN, at 2,472,744 to 2,474,417 _10720 Position (kb) 2472 2473Strain fitness (log2 ratio) -2 -1 0 1at 2471.396 kb on - strand, within CA264_10705at 2471.402 kb on + strand, within CA264_10705at 2471.402 kb on + strand, within CA264_10705at 2471.402 kb on + strand, within CA264_10705at 2471.403 kb on - strand, within CA264_10705at 2471.588 kb on - strandat 2471.607 kb on - strandat 2471.672 kb on + strand, within CA264_10710at 2471.747 kb on - strand, within CA264_10710at 2471.749 kb on - strand, within CA264_10710at 2471.786 kb on + strand, within CA264_10710at 2471.895 kb on + strand, within CA264_10710at 2471.896 kb on - strand, within CA264_10710at 2471.978 kb on + strand, within CA264_10710at 2471.979 kb on - strand, within CA264_10710at 2472.027 kb on - strandat 2472.039 kb on + strandat 2472.065 kb on + strandat 2472.066 kb on - strandat 2472.066 kb on - strandat 2472.073 kb on + strandat 2472.073 kb on + strandat 2472.074 kb on - strandat 2472.139 kb on + strandat 2472.228 kb on + strandat 2472.234 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.337 kb on - strandat 2472.339 kb on + strandat 2472.364 kb on - strandat 2472.382 kb on - strandat 2472.382 kb on - strandat 2472.388 kb on - strandat 2472.398 kb on - strandat 2472.485 kb on + strand, within CA264_10715at 2472.550 kb on - strand, within CA264_10715at 2472.643 kb on - strand, within CA264_10715at 2472.643 kb on - strand, within CA264_10715at 2472.643 kb on - strand, within CA264_10715at 2472.702 kb on + strandat 2472.707 kb on - strandat 2472.880 kb on + strandat 2472.971 kb on - strand, within CA264_10720at 2473.123 kb on - strand, within CA264_10720at 2473.137 kb on - strand, within CA264_10720at 2473.327 kb on + strand, within CA264_10720at 2473.328 kb on - strand, within CA264_10720at 2473.328 kb on - strand, within CA264_10720at 2473.532 kb on - strand, within CA264_10720at 2473.532 kb on - strand, within CA264_10720at 2473.559 kb on - strand, within CA264_10720at 2473.564 kb on - strand, within CA264_10720at 2473.611 kb on - strand, within CA264_10720at 2473.611 kb on - strand, within CA264_10720

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,471,396 - CA264_10705 0.87 -1.0
2,471,402 + CA264_10705 0.87 -0.5
2,471,402 + CA264_10705 0.87 -0.3
2,471,402 + CA264_10705 0.87 +0.3
2,471,403 - CA264_10705 0.87 +1.5
2,471,588 - -1.2
2,471,607 - -0.6
2,471,672 + CA264_10710 0.15 +0.6
2,471,747 - CA264_10710 0.32 -2.3
2,471,749 - CA264_10710 0.32 -1.4
2,471,786 + CA264_10710 0.40 +0.1
2,471,895 + CA264_10710 0.64 -0.5
2,471,896 - CA264_10710 0.65 +0.4
2,471,978 + CA264_10710 0.83 -0.5
2,471,979 - CA264_10710 0.83 -0.7
2,472,027 - -0.2
2,472,039 + +0.1
2,472,065 + +0.8
2,472,066 - +0.1
2,472,066 - +0.3
2,472,073 + -1.3
2,472,073 + -0.4
2,472,074 - -0.4
2,472,139 + -0.0
2,472,228 + -1.1
2,472,234 - -0.2
2,472,312 - +0.1
2,472,312 - +0.4
2,472,312 - -0.8
2,472,312 - -0.5
2,472,337 - -0.6
2,472,339 + -0.6
2,472,364 - -1.7
2,472,382 - +1.1
2,472,382 - +0.4
2,472,388 - -1.1
2,472,398 - -0.6
2,472,485 + CA264_10715 0.33 -0.5
2,472,550 - CA264_10715 0.55 +1.4
2,472,643 - CA264_10715 0.86 -0.3
2,472,643 - CA264_10715 0.86 +0.7
2,472,643 - CA264_10715 0.86 +0.1
2,472,702 + -0.6
2,472,707 - +0.7
2,472,880 + +0.4
2,472,971 - CA264_10720 0.14 +0.1
2,473,123 - CA264_10720 0.23 -0.0
2,473,137 - CA264_10720 0.23 +0.6
2,473,327 + CA264_10720 0.35 +0.7
2,473,328 - CA264_10720 0.35 +0.5
2,473,328 - CA264_10720 0.35 -0.2
2,473,532 - CA264_10720 0.47 +0.8
2,473,532 - CA264_10720 0.47 +0.4
2,473,559 - CA264_10720 0.49 +1.2
2,473,564 - CA264_10720 0.49 +0.7
2,473,611 - CA264_10720 0.52 +1.3
2,473,611 - CA264_10720 0.52 +0.5

Or see this region's nucleotide sequence