Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10165

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10165 and CA264_10170 are separated by 30 nucleotides CA264_10165: CA264_10165 - T9SS C-terminal target domain-containing protein, at 2,361,003 to 2,363,897 _10165 CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268 _10170 Position (kb) 2361 2362 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2360.032 kb on - strandat 2360.141 kb on - strandat 2360.141 kb on - strandat 2360.184 kb on - strandat 2360.197 kb on - strandat 2360.218 kb on - strandat 2360.249 kb on + strandat 2360.250 kb on - strandat 2360.280 kb on - strandat 2360.289 kb on - strandat 2360.346 kb on + strandat 2360.347 kb on - strandat 2360.370 kb on + strandat 2360.373 kb on + strandat 2360.374 kb on - strandat 2360.374 kb on - strandat 2360.378 kb on - strandat 2360.400 kb on - strandat 2360.432 kb on + strandat 2360.432 kb on + strandat 2360.464 kb on + strandat 2360.464 kb on + strandat 2360.468 kb on + strandat 2360.526 kb on + strandat 2360.532 kb on + strandat 2360.536 kb on + strandat 2360.537 kb on - strandat 2360.537 kb on - strandat 2360.538 kb on + strandat 2360.538 kb on + strandat 2360.539 kb on - strandat 2360.550 kb on + strandat 2360.551 kb on - strandat 2360.551 kb on - strandat 2360.586 kb on - strandat 2360.604 kb on + strandat 2360.617 kb on + strandat 2360.618 kb on - strandat 2360.632 kb on - strandat 2360.720 kb on - strandat 2360.720 kb on - strandat 2360.720 kb on - strandat 2360.742 kb on + strandat 2360.743 kb on - strandat 2360.754 kb on - strandat 2360.758 kb on - strandat 2360.758 kb on - strandat 2360.764 kb on - strandat 2360.764 kb on - strandat 2360.764 kb on - strandat 2360.866 kb on - strandat 2361.005 kb on - strandat 2361.061 kb on + strandat 2361.365 kb on - strand, within CA264_10165at 2361.406 kb on + strand, within CA264_10165at 2361.406 kb on + strand, within CA264_10165at 2361.415 kb on + strand, within CA264_10165at 2361.416 kb on - strand, within CA264_10165at 2361.419 kb on + strand, within CA264_10165at 2361.419 kb on + strand, within CA264_10165at 2361.420 kb on - strand, within CA264_10165at 2361.520 kb on + strand, within CA264_10165at 2361.673 kb on + strand, within CA264_10165at 2361.673 kb on + strand, within CA264_10165at 2361.709 kb on + strand, within CA264_10165at 2361.710 kb on - strand, within CA264_10165at 2361.760 kb on + strand, within CA264_10165at 2361.761 kb on - strand, within CA264_10165at 2361.761 kb on - strand, within CA264_10165at 2361.761 kb on - strand, within CA264_10165at 2361.761 kb on - strand, within CA264_10165at 2361.761 kb on - strand, within CA264_10165at 2361.761 kb on - strand, within CA264_10165at 2361.846 kb on - strand, within CA264_10165at 2361.846 kb on - strand, within CA264_10165at 2361.926 kb on + strand, within CA264_10165at 2361.928 kb on + strand, within CA264_10165at 2361.929 kb on - strand, within CA264_10165at 2362.208 kb on - strand, within CA264_10165at 2362.458 kb on + strand, within CA264_10165at 2362.458 kb on + strand, within CA264_10165at 2362.459 kb on - strand, within CA264_10165at 2362.570 kb on + strand, within CA264_10165at 2362.605 kb on + strand, within CA264_10165at 2362.609 kb on + strand, within CA264_10165at 2362.612 kb on + strand, within CA264_10165at 2362.612 kb on + strand, within CA264_10165at 2362.612 kb on + strand, within CA264_10165at 2362.612 kb on + strand, within CA264_10165at 2362.612 kb on + strand, within CA264_10165at 2362.613 kb on - strand, within CA264_10165at 2362.613 kb on - strand, within CA264_10165at 2362.794 kb on + strand, within CA264_10165at 2362.795 kb on - strand, within CA264_10165at 2362.912 kb on + strand, within CA264_10165at 2362.913 kb on - strand, within CA264_10165at 2362.913 kb on - strand, within CA264_10165at 2362.988 kb on + strand, within CA264_10165at 2363.055 kb on - strand, within CA264_10165at 2363.087 kb on + strand, within CA264_10165at 2363.116 kb on - strand, within CA264_10165at 2363.872 kb on + strandat 2363.872 kb on + strandat 2363.924 kb on - strandat 2363.929 kb on + strandat 2363.929 kb on + strandat 2363.998 kb on - strandat 2364.244 kb on + strand, within CA264_10170at 2364.244 kb on + strand, within CA264_10170at 2364.263 kb on - strand, within CA264_10170at 2364.287 kb on - strand, within CA264_10170at 2364.299 kb on - strand, within CA264_10170at 2364.299 kb on - strand, within CA264_10170at 2364.598 kb on + strand, within CA264_10170at 2364.623 kb on + strand, within CA264_10170at 2364.636 kb on + strand, within CA264_10170at 2364.656 kb on + strand, within CA264_10170at 2364.657 kb on - strand, within CA264_10170at 2364.712 kb on + strand, within CA264_10170at 2364.768 kb on - strand, within CA264_10170at 2364.862 kb on + strand, within CA264_10170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,360,032 - -0.2
2,360,141 - -0.3
2,360,141 - +0.1
2,360,184 - +0.6
2,360,197 - -0.1
2,360,218 - -1.7
2,360,249 + +0.1
2,360,250 - +0.1
2,360,280 - +1.1
2,360,289 - +0.3
2,360,346 + +0.7
2,360,347 - +0.2
2,360,370 + -0.5
2,360,373 + -0.9
2,360,374 - -0.1
2,360,374 - +0.7
2,360,378 - -1.7
2,360,400 - +0.6
2,360,432 + -0.2
2,360,432 + +0.3
2,360,464 + +1.0
2,360,464 + -0.9
2,360,468 + -1.7
2,360,526 + -0.3
2,360,532 + -0.1
2,360,536 + +0.5
2,360,537 - +0.3
2,360,537 - +0.3
2,360,538 + -0.6
2,360,538 + +0.0
2,360,539 - +1.5
2,360,550 + -0.1
2,360,551 - +0.1
2,360,551 - -0.6
2,360,586 - +0.4
2,360,604 + -0.8
2,360,617 + +1.3
2,360,618 - -0.3
2,360,632 - +0.2
2,360,720 - +0.2
2,360,720 - +1.1
2,360,720 - +0.6
2,360,742 + +0.3
2,360,743 - -0.4
2,360,754 - -1.4
2,360,758 - -0.3
2,360,758 - -0.3
2,360,764 - +3.4
2,360,764 - -0.3
2,360,764 - -0.2
2,360,866 - -0.5
2,361,005 - -0.4
2,361,061 + +0.0
2,361,365 - CA264_10165 0.13 +0.2
2,361,406 + CA264_10165 0.14 +1.6
2,361,406 + CA264_10165 0.14 -0.5
2,361,415 + CA264_10165 0.14 -0.7
2,361,416 - CA264_10165 0.14 -0.0
2,361,419 + CA264_10165 0.14 -1.1
2,361,419 + CA264_10165 0.14 -0.4
2,361,420 - CA264_10165 0.14 -0.6
2,361,520 + CA264_10165 0.18 +0.4
2,361,673 + CA264_10165 0.23 -0.5
2,361,673 + CA264_10165 0.23 +1.1
2,361,709 + CA264_10165 0.24 -1.0
2,361,710 - CA264_10165 0.24 -0.3
2,361,760 + CA264_10165 0.26 +0.5
2,361,761 - CA264_10165 0.26 -0.8
2,361,761 - CA264_10165 0.26 -0.5
2,361,761 - CA264_10165 0.26 -0.8
2,361,761 - CA264_10165 0.26 -0.1
2,361,761 - CA264_10165 0.26 -0.3
2,361,761 - CA264_10165 0.26 -0.1
2,361,846 - CA264_10165 0.29 -0.3
2,361,846 - CA264_10165 0.29 -0.4
2,361,926 + CA264_10165 0.32 +0.9
2,361,928 + CA264_10165 0.32 -0.2
2,361,929 - CA264_10165 0.32 -1.2
2,362,208 - CA264_10165 0.42 -1.1
2,362,458 + CA264_10165 0.50 +0.8
2,362,458 + CA264_10165 0.50 -1.1
2,362,459 - CA264_10165 0.50 -1.2
2,362,570 + CA264_10165 0.54 +1.0
2,362,605 + CA264_10165 0.55 -1.7
2,362,609 + CA264_10165 0.55 -0.8
2,362,612 + CA264_10165 0.56 -1.1
2,362,612 + CA264_10165 0.56 -1.2
2,362,612 + CA264_10165 0.56 +1.5
2,362,612 + CA264_10165 0.56 -1.0
2,362,612 + CA264_10165 0.56 +2.1
2,362,613 - CA264_10165 0.56 -0.7
2,362,613 - CA264_10165 0.56 -2.0
2,362,794 + CA264_10165 0.62 -0.3
2,362,795 - CA264_10165 0.62 -0.6
2,362,912 + CA264_10165 0.66 -1.2
2,362,913 - CA264_10165 0.66 -0.3
2,362,913 - CA264_10165 0.66 -0.3
2,362,988 + CA264_10165 0.69 +0.9
2,363,055 - CA264_10165 0.71 -0.5
2,363,087 + CA264_10165 0.72 +0.9
2,363,116 - CA264_10165 0.73 +0.6
2,363,872 + +0.5
2,363,872 + -1.6
2,363,924 - +0.3
2,363,929 + -0.4
2,363,929 + -0.2
2,363,998 - +0.9
2,364,244 + CA264_10170 0.24 +1.7
2,364,244 + CA264_10170 0.24 +0.1
2,364,263 - CA264_10170 0.25 +0.3
2,364,287 - CA264_10170 0.27 +1.5
2,364,299 - CA264_10170 0.28 +0.2
2,364,299 - CA264_10170 0.28 -0.1
2,364,598 + CA264_10170 0.50 +0.4
2,364,623 + CA264_10170 0.52 -0.1
2,364,636 + CA264_10170 0.53 -0.8
2,364,656 + CA264_10170 0.54 +0.3
2,364,657 - CA264_10170 0.54 -0.6
2,364,712 + CA264_10170 0.58 -0.2
2,364,768 - CA264_10170 0.63 -0.6
2,364,862 + CA264_10170 0.70 -0.0

Or see this region's nucleotide sequence