Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10105

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10100 and CA264_10105 are separated by 80 nucleotidesCA264_10105 and CA264_10110 are separated by 428 nucleotides CA264_10100: CA264_10100 - nitrite reductase, at 2,340,841 to 2,343,057 _10100 CA264_10105: CA264_10105 - MFS transporter, at 2,343,138 to 2,344,193 _10105 CA264_10110: CA264_10110 - C4-dicarboxylate ABC transporter, at 2,344,622 to 2,345,674 _10110 Position (kb) 2343 2344 2345Strain fitness (log2 ratio) -1 0 1 2at 2342.141 kb on - strand, within CA264_10100at 2342.141 kb on - strand, within CA264_10100at 2342.143 kb on - strand, within CA264_10100at 2342.198 kb on - strand, within CA264_10100at 2342.231 kb on + strand, within CA264_10100at 2342.231 kb on + strand, within CA264_10100at 2342.236 kb on - strand, within CA264_10100at 2342.236 kb on - strand, within CA264_10100at 2342.358 kb on + strand, within CA264_10100at 2342.358 kb on + strand, within CA264_10100at 2342.414 kb on + strand, within CA264_10100at 2342.482 kb on + strand, within CA264_10100at 2342.483 kb on - strand, within CA264_10100at 2342.549 kb on - strand, within CA264_10100at 2342.549 kb on - strand, within CA264_10100at 2342.549 kb on - strand, within CA264_10100at 2342.571 kb on - strand, within CA264_10100at 2342.581 kb on - strand, within CA264_10100at 2342.590 kb on - strand, within CA264_10100at 2342.610 kb on + strand, within CA264_10100at 2342.611 kb on - strand, within CA264_10100at 2342.620 kb on - strand, within CA264_10100at 2342.620 kb on - strand, within CA264_10100at 2342.621 kb on + strand, within CA264_10100at 2342.621 kb on + strand, within CA264_10100at 2342.622 kb on - strand, within CA264_10100at 2342.622 kb on - strand, within CA264_10100at 2342.622 kb on - strand, within CA264_10100at 2342.678 kb on + strand, within CA264_10100at 2342.679 kb on - strand, within CA264_10100at 2342.698 kb on - strand, within CA264_10100at 2342.811 kb on - strand, within CA264_10100at 2342.885 kb on - strandat 2342.885 kb on - strandat 2342.885 kb on - strandat 2342.902 kb on + strandat 2342.903 kb on - strandat 2342.908 kb on + strandat 2342.909 kb on - strandat 2342.996 kb on + strandat 2342.996 kb on + strandat 2342.996 kb on + strandat 2343.040 kb on - strandat 2343.040 kb on - strandat 2343.060 kb on + strandat 2343.070 kb on - strandat 2343.077 kb on - strandat 2343.082 kb on - strandat 2343.095 kb on + strandat 2343.273 kb on + strand, within CA264_10105at 2343.368 kb on - strand, within CA264_10105at 2343.516 kb on - strand, within CA264_10105at 2343.610 kb on - strand, within CA264_10105at 2343.632 kb on + strand, within CA264_10105at 2343.632 kb on + strand, within CA264_10105at 2343.632 kb on + strand, within CA264_10105at 2343.665 kb on + strand, within CA264_10105at 2343.745 kb on + strand, within CA264_10105at 2343.745 kb on + strand, within CA264_10105at 2343.745 kb on + strand, within CA264_10105at 2343.746 kb on - strand, within CA264_10105at 2343.746 kb on - strand, within CA264_10105at 2343.746 kb on - strand, within CA264_10105at 2343.749 kb on + strand, within CA264_10105at 2343.750 kb on - strand, within CA264_10105at 2343.753 kb on + strand, within CA264_10105at 2343.753 kb on + strand, within CA264_10105at 2343.753 kb on + strand, within CA264_10105at 2343.754 kb on - strand, within CA264_10105at 2343.773 kb on + strand, within CA264_10105at 2343.820 kb on - strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.900 kb on - strand, within CA264_10105at 2343.982 kb on + strand, within CA264_10105at 2344.063 kb on + strand, within CA264_10105at 2344.111 kb on + strandat 2344.112 kb on - strandat 2344.193 kb on + strandat 2344.212 kb on + strandat 2344.236 kb on + strandat 2344.346 kb on - strandat 2344.353 kb on + strandat 2344.357 kb on - strandat 2344.357 kb on - strandat 2344.413 kb on + strandat 2344.414 kb on - strandat 2344.414 kb on - strandat 2344.469 kb on + strandat 2344.470 kb on - strandat 2344.478 kb on + strandat 2344.478 kb on + strandat 2344.526 kb on - strandat 2344.533 kb on - strandat 2344.550 kb on + strandat 2344.553 kb on - strandat 2344.614 kb on - strandat 2344.621 kb on + strandat 2344.622 kb on - strandat 2344.636 kb on + strandat 2344.636 kb on + strandat 2344.641 kb on + strandat 2344.673 kb on + strandat 2344.693 kb on + strandat 2344.719 kb on - strandat 2344.719 kb on - strandat 2344.762 kb on - strand, within CA264_10110at 2344.831 kb on + strand, within CA264_10110at 2344.920 kb on + strand, within CA264_10110at 2344.990 kb on + strand, within CA264_10110at 2344.990 kb on + strand, within CA264_10110at 2345.165 kb on + strand, within CA264_10110at 2345.165 kb on + strand, within CA264_10110at 2345.166 kb on - strand, within CA264_10110at 2345.167 kb on + strand, within CA264_10110at 2345.168 kb on - strand, within CA264_10110at 2345.168 kb on - strand, within CA264_10110at 2345.179 kb on + strand, within CA264_10110at 2345.180 kb on - strand, within CA264_10110at 2345.180 kb on - strand, within CA264_10110at 2345.180 kb on - strand, within CA264_10110at 2345.187 kb on - strand, within CA264_10110at 2345.187 kb on - strand, within CA264_10110

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,342,141 - CA264_10100 0.59 +0.2
2,342,141 - CA264_10100 0.59 +1.0
2,342,143 - CA264_10100 0.59 -0.8
2,342,198 - CA264_10100 0.61 +0.7
2,342,231 + CA264_10100 0.63 +0.0
2,342,231 + CA264_10100 0.63 +1.1
2,342,236 - CA264_10100 0.63 +0.8
2,342,236 - CA264_10100 0.63 +1.8
2,342,358 + CA264_10100 0.68 +0.1
2,342,358 + CA264_10100 0.68 +1.4
2,342,414 + CA264_10100 0.71 +0.3
2,342,482 + CA264_10100 0.74 +0.8
2,342,483 - CA264_10100 0.74 +1.3
2,342,549 - CA264_10100 0.77 +0.2
2,342,549 - CA264_10100 0.77 +0.4
2,342,549 - CA264_10100 0.77 +0.8
2,342,571 - CA264_10100 0.78 -1.1
2,342,581 - CA264_10100 0.78 +0.6
2,342,590 - CA264_10100 0.79 +2.0
2,342,610 + CA264_10100 0.80 +0.4
2,342,611 - CA264_10100 0.80 +0.9
2,342,620 - CA264_10100 0.80 +0.5
2,342,620 - CA264_10100 0.80 +0.3
2,342,621 + CA264_10100 0.80 -0.2
2,342,621 + CA264_10100 0.80 +0.1
2,342,622 - CA264_10100 0.80 -0.8
2,342,622 - CA264_10100 0.80 +0.7
2,342,622 - CA264_10100 0.80 +0.8
2,342,678 + CA264_10100 0.83 +0.8
2,342,679 - CA264_10100 0.83 +0.9
2,342,698 - CA264_10100 0.84 +0.7
2,342,811 - CA264_10100 0.89 +0.4
2,342,885 - +0.8
2,342,885 - -0.6
2,342,885 - +0.4
2,342,902 + +0.8
2,342,903 - +0.7
2,342,908 + +0.1
2,342,909 - +0.9
2,342,996 + +0.4
2,342,996 + -1.1
2,342,996 + -0.7
2,343,040 - +0.9
2,343,040 - +0.7
2,343,060 + -1.1
2,343,070 - -0.1
2,343,077 - +0.5
2,343,082 - +2.2
2,343,095 + +0.2
2,343,273 + CA264_10105 0.13 +0.7
2,343,368 - CA264_10105 0.22 +0.8
2,343,516 - CA264_10105 0.36 +1.7
2,343,610 - CA264_10105 0.45 +1.1
2,343,632 + CA264_10105 0.47 +1.4
2,343,632 + CA264_10105 0.47 +0.2
2,343,632 + CA264_10105 0.47 +0.8
2,343,665 + CA264_10105 0.50 +1.2
2,343,745 + CA264_10105 0.57 -0.2
2,343,745 + CA264_10105 0.57 +1.3
2,343,745 + CA264_10105 0.57 +0.8
2,343,746 - CA264_10105 0.58 +0.8
2,343,746 - CA264_10105 0.58 +0.8
2,343,746 - CA264_10105 0.58 +1.1
2,343,749 + CA264_10105 0.58 +1.1
2,343,750 - CA264_10105 0.58 +0.7
2,343,753 + CA264_10105 0.58 +0.4
2,343,753 + CA264_10105 0.58 +1.1
2,343,753 + CA264_10105 0.58 +2.5
2,343,754 - CA264_10105 0.58 +1.2
2,343,773 + CA264_10105 0.60 +0.3
2,343,820 - CA264_10105 0.65 +1.4
2,343,824 + CA264_10105 0.65 +0.9
2,343,824 + CA264_10105 0.65 +0.5
2,343,824 + CA264_10105 0.65 +0.9
2,343,824 + CA264_10105 0.65 +0.7
2,343,824 + CA264_10105 0.65 +0.6
2,343,824 + CA264_10105 0.65 -0.2
2,343,825 - CA264_10105 0.65 +1.5
2,343,825 - CA264_10105 0.65 +2.1
2,343,825 - CA264_10105 0.65 +0.7
2,343,825 - CA264_10105 0.65 +1.5
2,343,825 - CA264_10105 0.65 +1.9
2,343,900 - CA264_10105 0.72 +1.2
2,343,982 + CA264_10105 0.80 +1.2
2,344,063 + CA264_10105 0.88 +0.5
2,344,111 + -0.4
2,344,112 - +0.8
2,344,193 + +0.4
2,344,212 + +1.4
2,344,236 + +1.8
2,344,346 - +1.7
2,344,353 + -1.1
2,344,357 - +2.0
2,344,357 - +1.6
2,344,413 + +0.2
2,344,414 - +0.2
2,344,414 - +2.5
2,344,469 + +0.3
2,344,470 - +2.3
2,344,478 + -0.2
2,344,478 + +0.6
2,344,526 - +1.2
2,344,533 - +1.3
2,344,550 + -0.6
2,344,553 - +0.9
2,344,614 - +1.6
2,344,621 + +0.3
2,344,622 - +1.5
2,344,636 + +0.4
2,344,636 + -0.2
2,344,641 + -0.2
2,344,673 + +1.1
2,344,693 + +0.7
2,344,719 - +0.7
2,344,719 - +0.1
2,344,762 - CA264_10110 0.13 +0.2
2,344,831 + CA264_10110 0.20 -0.6
2,344,920 + CA264_10110 0.28 -0.3
2,344,990 + CA264_10110 0.35 -1.2
2,344,990 + CA264_10110 0.35 -0.2
2,345,165 + CA264_10110 0.52 +1.2
2,345,165 + CA264_10110 0.52 -0.3
2,345,166 - CA264_10110 0.52 -1.0
2,345,167 + CA264_10110 0.52 -0.9
2,345,168 - CA264_10110 0.52 +0.4
2,345,168 - CA264_10110 0.52 +0.7
2,345,179 + CA264_10110 0.53 -0.5
2,345,180 - CA264_10110 0.53 +0.6
2,345,180 - CA264_10110 0.53 +0.5
2,345,180 - CA264_10110 0.53 -0.5
2,345,187 - CA264_10110 0.54 +0.5
2,345,187 - CA264_10110 0.54 +0.5

Or see this region's nucleotide sequence