Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10100

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10090 and CA264_10095 are separated by 18 nucleotidesCA264_10095 and CA264_10100 are separated by 27 nucleotidesCA264_10100 and CA264_10105 are separated by 80 nucleotides CA264_10090: CA264_10090 - (2Fe-2S)-binding protein, at 2,339,698 to 2,340,216 _10090 CA264_10095: CA264_10095 - 4Fe-4S ferredoxin, at 2,340,235 to 2,340,813 _10095 CA264_10100: CA264_10100 - nitrite reductase, at 2,340,841 to 2,343,057 _10100 CA264_10105: CA264_10105 - MFS transporter, at 2,343,138 to 2,344,193 _10105 Position (kb) 2340 2341 2342 2343 2344Strain fitness (log2 ratio) -1 0 1 2 3at 2339.881 kb on + strand, within CA264_10090at 2339.943 kb on - strand, within CA264_10090at 2340.219 kb on + strandat 2340.219 kb on + strandat 2340.241 kb on + strandat 2340.318 kb on + strand, within CA264_10095at 2340.395 kb on - strand, within CA264_10095at 2340.437 kb on + strand, within CA264_10095at 2340.672 kb on - strand, within CA264_10095at 2340.805 kb on + strandat 2340.833 kb on - strandat 2340.833 kb on - strandat 2340.835 kb on + strandat 2340.836 kb on - strandat 2340.838 kb on - strandat 2340.838 kb on - strandat 2340.859 kb on + strandat 2340.906 kb on + strandat 2340.907 kb on - strandat 2340.907 kb on - strandat 2340.907 kb on - strandat 2340.907 kb on - strandat 2340.916 kb on + strandat 2340.916 kb on + strandat 2340.916 kb on + strandat 2340.917 kb on - strandat 2340.936 kb on + strandat 2341.106 kb on + strand, within CA264_10100at 2341.107 kb on - strand, within CA264_10100at 2341.107 kb on - strand, within CA264_10100at 2341.250 kb on - strand, within CA264_10100at 2341.415 kb on + strand, within CA264_10100at 2341.418 kb on + strand, within CA264_10100at 2341.450 kb on + strand, within CA264_10100at 2341.451 kb on - strand, within CA264_10100at 2341.754 kb on - strand, within CA264_10100at 2341.754 kb on - strand, within CA264_10100at 2341.821 kb on - strand, within CA264_10100at 2341.880 kb on + strand, within CA264_10100at 2342.077 kb on + strand, within CA264_10100at 2342.078 kb on - strand, within CA264_10100at 2342.078 kb on - strand, within CA264_10100at 2342.141 kb on - strand, within CA264_10100at 2342.141 kb on - strand, within CA264_10100at 2342.143 kb on - strand, within CA264_10100at 2342.198 kb on - strand, within CA264_10100at 2342.231 kb on + strand, within CA264_10100at 2342.231 kb on + strand, within CA264_10100at 2342.236 kb on - strand, within CA264_10100at 2342.236 kb on - strand, within CA264_10100at 2342.358 kb on + strand, within CA264_10100at 2342.358 kb on + strand, within CA264_10100at 2342.414 kb on + strand, within CA264_10100at 2342.482 kb on + strand, within CA264_10100at 2342.483 kb on - strand, within CA264_10100at 2342.549 kb on - strand, within CA264_10100at 2342.549 kb on - strand, within CA264_10100at 2342.549 kb on - strand, within CA264_10100at 2342.571 kb on - strand, within CA264_10100at 2342.581 kb on - strand, within CA264_10100at 2342.590 kb on - strand, within CA264_10100at 2342.610 kb on + strand, within CA264_10100at 2342.611 kb on - strand, within CA264_10100at 2342.620 kb on - strand, within CA264_10100at 2342.620 kb on - strand, within CA264_10100at 2342.621 kb on + strand, within CA264_10100at 2342.621 kb on + strand, within CA264_10100at 2342.622 kb on - strand, within CA264_10100at 2342.622 kb on - strand, within CA264_10100at 2342.622 kb on - strand, within CA264_10100at 2342.678 kb on + strand, within CA264_10100at 2342.679 kb on - strand, within CA264_10100at 2342.698 kb on - strand, within CA264_10100at 2342.811 kb on - strand, within CA264_10100at 2342.885 kb on - strandat 2342.885 kb on - strandat 2342.885 kb on - strandat 2342.902 kb on + strandat 2342.903 kb on - strandat 2342.908 kb on + strandat 2342.909 kb on - strandat 2342.996 kb on + strandat 2342.996 kb on + strandat 2342.996 kb on + strandat 2343.040 kb on - strandat 2343.040 kb on - strandat 2343.060 kb on + strandat 2343.070 kb on - strandat 2343.077 kb on - strandat 2343.082 kb on - strandat 2343.095 kb on + strandat 2343.273 kb on + strand, within CA264_10105at 2343.368 kb on - strand, within CA264_10105at 2343.516 kb on - strand, within CA264_10105at 2343.610 kb on - strand, within CA264_10105at 2343.632 kb on + strand, within CA264_10105at 2343.632 kb on + strand, within CA264_10105at 2343.632 kb on + strand, within CA264_10105at 2343.665 kb on + strand, within CA264_10105at 2343.745 kb on + strand, within CA264_10105at 2343.745 kb on + strand, within CA264_10105at 2343.745 kb on + strand, within CA264_10105at 2343.746 kb on - strand, within CA264_10105at 2343.746 kb on - strand, within CA264_10105at 2343.746 kb on - strand, within CA264_10105at 2343.749 kb on + strand, within CA264_10105at 2343.750 kb on - strand, within CA264_10105at 2343.753 kb on + strand, within CA264_10105at 2343.753 kb on + strand, within CA264_10105at 2343.753 kb on + strand, within CA264_10105at 2343.754 kb on - strand, within CA264_10105at 2343.773 kb on + strand, within CA264_10105at 2343.820 kb on - strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.824 kb on + strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.825 kb on - strand, within CA264_10105at 2343.900 kb on - strand, within CA264_10105at 2343.982 kb on + strand, within CA264_10105

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,339,881 + CA264_10090 0.35 -0.6
2,339,943 - CA264_10090 0.47 +0.0
2,340,219 + -0.6
2,340,219 + -0.9
2,340,241 + +0.2
2,340,318 + CA264_10095 0.14 -0.3
2,340,395 - CA264_10095 0.28 -0.2
2,340,437 + CA264_10095 0.35 +0.0
2,340,672 - CA264_10095 0.75 +0.1
2,340,805 + +0.0
2,340,833 - +0.3
2,340,833 - +0.2
2,340,835 + +0.1
2,340,836 - +2.9
2,340,838 - +0.5
2,340,838 - +0.6
2,340,859 + +1.6
2,340,906 + +0.5
2,340,907 - +1.8
2,340,907 - +1.9
2,340,907 - +2.4
2,340,907 - +1.0
2,340,916 + +0.5
2,340,916 + +0.7
2,340,916 + +0.4
2,340,917 - +1.5
2,340,936 + +1.0
2,341,106 + CA264_10100 0.12 -0.1
2,341,107 - CA264_10100 0.12 +2.1
2,341,107 - CA264_10100 0.12 +2.9
2,341,250 - CA264_10100 0.18 +1.2
2,341,415 + CA264_10100 0.26 +1.8
2,341,418 + CA264_10100 0.26 +2.4
2,341,450 + CA264_10100 0.27 +1.2
2,341,451 - CA264_10100 0.28 +1.9
2,341,754 - CA264_10100 0.41 +1.7
2,341,754 - CA264_10100 0.41 +1.3
2,341,821 - CA264_10100 0.44 +0.7
2,341,880 + CA264_10100 0.47 +0.8
2,342,077 + CA264_10100 0.56 +2.5
2,342,078 - CA264_10100 0.56 +1.2
2,342,078 - CA264_10100 0.56 +0.6
2,342,141 - CA264_10100 0.59 +0.2
2,342,141 - CA264_10100 0.59 +1.0
2,342,143 - CA264_10100 0.59 -0.8
2,342,198 - CA264_10100 0.61 +0.7
2,342,231 + CA264_10100 0.63 +0.0
2,342,231 + CA264_10100 0.63 +1.1
2,342,236 - CA264_10100 0.63 +0.8
2,342,236 - CA264_10100 0.63 +1.8
2,342,358 + CA264_10100 0.68 +0.1
2,342,358 + CA264_10100 0.68 +1.4
2,342,414 + CA264_10100 0.71 +0.3
2,342,482 + CA264_10100 0.74 +0.8
2,342,483 - CA264_10100 0.74 +1.3
2,342,549 - CA264_10100 0.77 +0.2
2,342,549 - CA264_10100 0.77 +0.4
2,342,549 - CA264_10100 0.77 +0.8
2,342,571 - CA264_10100 0.78 -1.1
2,342,581 - CA264_10100 0.78 +0.6
2,342,590 - CA264_10100 0.79 +2.0
2,342,610 + CA264_10100 0.80 +0.4
2,342,611 - CA264_10100 0.80 +0.9
2,342,620 - CA264_10100 0.80 +0.5
2,342,620 - CA264_10100 0.80 +0.3
2,342,621 + CA264_10100 0.80 -0.2
2,342,621 + CA264_10100 0.80 +0.1
2,342,622 - CA264_10100 0.80 -0.8
2,342,622 - CA264_10100 0.80 +0.7
2,342,622 - CA264_10100 0.80 +0.8
2,342,678 + CA264_10100 0.83 +0.8
2,342,679 - CA264_10100 0.83 +0.9
2,342,698 - CA264_10100 0.84 +0.7
2,342,811 - CA264_10100 0.89 +0.4
2,342,885 - +0.8
2,342,885 - -0.6
2,342,885 - +0.4
2,342,902 + +0.8
2,342,903 - +0.7
2,342,908 + +0.1
2,342,909 - +0.9
2,342,996 + +0.4
2,342,996 + -1.1
2,342,996 + -0.7
2,343,040 - +0.9
2,343,040 - +0.7
2,343,060 + -1.1
2,343,070 - -0.1
2,343,077 - +0.5
2,343,082 - +2.2
2,343,095 + +0.2
2,343,273 + CA264_10105 0.13 +0.7
2,343,368 - CA264_10105 0.22 +0.8
2,343,516 - CA264_10105 0.36 +1.7
2,343,610 - CA264_10105 0.45 +1.1
2,343,632 + CA264_10105 0.47 +1.4
2,343,632 + CA264_10105 0.47 +0.2
2,343,632 + CA264_10105 0.47 +0.8
2,343,665 + CA264_10105 0.50 +1.2
2,343,745 + CA264_10105 0.57 -0.2
2,343,745 + CA264_10105 0.57 +1.3
2,343,745 + CA264_10105 0.57 +0.8
2,343,746 - CA264_10105 0.58 +0.8
2,343,746 - CA264_10105 0.58 +0.8
2,343,746 - CA264_10105 0.58 +1.1
2,343,749 + CA264_10105 0.58 +1.1
2,343,750 - CA264_10105 0.58 +0.7
2,343,753 + CA264_10105 0.58 +0.4
2,343,753 + CA264_10105 0.58 +1.1
2,343,753 + CA264_10105 0.58 +2.5
2,343,754 - CA264_10105 0.58 +1.2
2,343,773 + CA264_10105 0.60 +0.3
2,343,820 - CA264_10105 0.65 +1.4
2,343,824 + CA264_10105 0.65 +0.9
2,343,824 + CA264_10105 0.65 +0.5
2,343,824 + CA264_10105 0.65 +0.9
2,343,824 + CA264_10105 0.65 +0.7
2,343,824 + CA264_10105 0.65 +0.6
2,343,824 + CA264_10105 0.65 -0.2
2,343,825 - CA264_10105 0.65 +1.5
2,343,825 - CA264_10105 0.65 +2.1
2,343,825 - CA264_10105 0.65 +0.7
2,343,825 - CA264_10105 0.65 +1.5
2,343,825 - CA264_10105 0.65 +1.9
2,343,900 - CA264_10105 0.72 +1.2
2,343,982 + CA264_10105 0.80 +1.2

Or see this region's nucleotide sequence