Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08560

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_08555 and CA264_08560 are separated by 187 nucleotidesCA264_08560 and CA264_08565 are separated by 21 nucleotidesCA264_08565 and CA264_08570 are separated by 151 nucleotides CA264_08555: CA264_08555 - hypothetical protein, at 1,986,449 to 1,987,345 _08555 CA264_08560: CA264_08560 - adenylyl-sulfate kinase, at 1,987,533 to 1,988,168 _08560 CA264_08565: CA264_08565 - 3'(2'),5'-bisphosphate nucleotidase, at 1,988,190 to 1,989,011 _08565 CA264_08570: CA264_08570 - glycogen debranching enzyme, at 1,989,163 to 1,991,295 _08570 Position (kb) 1987 1988 1989Strain fitness (log2 ratio) -2 -1 0 1 2at 1986.801 kb on + strand, within CA264_08555at 1986.802 kb on - strand, within CA264_08555at 1986.822 kb on + strand, within CA264_08555at 1986.822 kb on + strand, within CA264_08555at 1986.823 kb on - strand, within CA264_08555at 1986.849 kb on + strand, within CA264_08555at 1986.850 kb on - strand, within CA264_08555at 1986.933 kb on + strand, within CA264_08555at 1986.960 kb on + strand, within CA264_08555at 1987.006 kb on - strand, within CA264_08555at 1987.006 kb on - strand, within CA264_08555at 1987.015 kb on + strand, within CA264_08555at 1987.093 kb on - strand, within CA264_08555at 1987.093 kb on - strand, within CA264_08555at 1987.100 kb on + strand, within CA264_08555at 1987.100 kb on + strand, within CA264_08555at 1987.100 kb on + strand, within CA264_08555at 1987.101 kb on - strand, within CA264_08555at 1987.126 kb on + strand, within CA264_08555at 1987.146 kb on + strand, within CA264_08555at 1987.146 kb on + strand, within CA264_08555at 1987.146 kb on + strand, within CA264_08555at 1987.146 kb on + strand, within CA264_08555at 1987.147 kb on - strand, within CA264_08555at 1987.195 kb on - strand, within CA264_08555at 1987.195 kb on - strand, within CA264_08555at 1987.242 kb on - strand, within CA264_08555at 1987.286 kb on + strandat 1987.286 kb on + strandat 1987.296 kb on + strandat 1987.500 kb on + strandat 1987.500 kb on + strandat 1987.550 kb on + strandat 1987.550 kb on + strandat 1987.551 kb on - strandat 1987.551 kb on - strandat 1987.551 kb on - strandat 1987.554 kb on + strandat 1987.555 kb on - strandat 1987.655 kb on + strand, within CA264_08560at 1987.681 kb on - strand, within CA264_08560at 1987.681 kb on - strand, within CA264_08560at 1987.698 kb on + strand, within CA264_08560at 1987.698 kb on + strand, within CA264_08560at 1987.700 kb on + strand, within CA264_08560at 1987.701 kb on - strand, within CA264_08560at 1987.701 kb on - strand, within CA264_08560at 1987.701 kb on - strand, within CA264_08560at 1987.705 kb on + strand, within CA264_08560at 1987.705 kb on + strand, within CA264_08560at 1987.705 kb on + strand, within CA264_08560at 1987.705 kb on + strand, within CA264_08560at 1987.705 kb on + strand, within CA264_08560at 1987.706 kb on - strand, within CA264_08560at 1987.851 kb on - strand, within CA264_08560at 1987.860 kb on + strand, within CA264_08560at 1987.883 kb on - strand, within CA264_08560at 1987.918 kb on + strand, within CA264_08560at 1987.918 kb on + strand, within CA264_08560at 1987.918 kb on + strand, within CA264_08560at 1987.919 kb on - strand, within CA264_08560at 1987.919 kb on - strand, within CA264_08560at 1987.920 kb on + strand, within CA264_08560at 1987.920 kb on + strand, within CA264_08560at 1987.920 kb on + strand, within CA264_08560at 1987.921 kb on - strand, within CA264_08560at 1987.925 kb on + strand, within CA264_08560at 1987.996 kb on + strand, within CA264_08560at 1988.158 kb on + strandat 1988.161 kb on + strandat 1988.162 kb on - strandat 1988.162 kb on - strandat 1988.167 kb on - strandat 1988.183 kb on + strandat 1988.184 kb on - strandat 1988.184 kb on - strandat 1988.187 kb on + strandat 1988.187 kb on + strandat 1988.187 kb on + strandat 1988.188 kb on - strandat 1988.188 kb on - strandat 1988.188 kb on - strandat 1988.188 kb on - strandat 1988.307 kb on + strand, within CA264_08565at 1988.307 kb on + strand, within CA264_08565at 1988.308 kb on - strand, within CA264_08565at 1988.382 kb on - strand, within CA264_08565at 1988.421 kb on - strand, within CA264_08565at 1988.548 kb on + strand, within CA264_08565at 1988.585 kb on + strand, within CA264_08565at 1988.586 kb on - strand, within CA264_08565at 1988.589 kb on + strand, within CA264_08565at 1988.589 kb on + strand, within CA264_08565at 1988.611 kb on + strand, within CA264_08565at 1988.612 kb on - strand, within CA264_08565at 1988.612 kb on - strand, within CA264_08565at 1988.613 kb on + strand, within CA264_08565at 1988.614 kb on - strand, within CA264_08565at 1988.614 kb on - strand, within CA264_08565at 1988.614 kb on - strand, within CA264_08565at 1988.616 kb on + strand, within CA264_08565at 1988.616 kb on + strand, within CA264_08565at 1988.647 kb on + strand, within CA264_08565at 1988.694 kb on - strand, within CA264_08565at 1988.753 kb on - strand, within CA264_08565at 1988.753 kb on - strand, within CA264_08565at 1988.938 kb on - strandat 1988.967 kb on + strandat 1989.002 kb on - strandat 1989.046 kb on - strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.129 kb on - strandat 1989.149 kb on + strandat 1989.165 kb on - strandat 1989.165 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
1,986,801 + CA264_08555 0.39 -0.1
1,986,802 - CA264_08555 0.39 +1.2
1,986,822 + CA264_08555 0.42 -0.2
1,986,822 + CA264_08555 0.42 +0.8
1,986,823 - CA264_08555 0.42 +0.0
1,986,849 + CA264_08555 0.45 +0.1
1,986,850 - CA264_08555 0.45 -0.2
1,986,933 + CA264_08555 0.54 +0.9
1,986,960 + CA264_08555 0.57 -0.7
1,987,006 - CA264_08555 0.62 -0.9
1,987,006 - CA264_08555 0.62 -0.8
1,987,015 + CA264_08555 0.63 +0.6
1,987,093 - CA264_08555 0.72 +0.2
1,987,093 - CA264_08555 0.72 -1.2
1,987,100 + CA264_08555 0.73 +1.0
1,987,100 + CA264_08555 0.73 -0.7
1,987,100 + CA264_08555 0.73 -1.0
1,987,101 - CA264_08555 0.73 +0.2
1,987,126 + CA264_08555 0.75 -0.7
1,987,146 + CA264_08555 0.78 -0.2
1,987,146 + CA264_08555 0.78 -0.2
1,987,146 + CA264_08555 0.78 +0.3
1,987,146 + CA264_08555 0.78 -0.4
1,987,147 - CA264_08555 0.78 -0.7
1,987,195 - CA264_08555 0.83 -0.6
1,987,195 - CA264_08555 0.83 -0.8
1,987,242 - CA264_08555 0.88 +2.6
1,987,286 + -0.1
1,987,286 + +0.1
1,987,296 + -0.7
1,987,500 + +0.1
1,987,500 + +0.0
1,987,550 + +0.1
1,987,550 + +0.0
1,987,551 - -0.2
1,987,551 - +0.3
1,987,551 - -0.3
1,987,554 + -2.1
1,987,555 - -0.0
1,987,655 + CA264_08560 0.19 +1.9
1,987,681 - CA264_08560 0.23 -0.8
1,987,681 - CA264_08560 0.23 +1.3
1,987,698 + CA264_08560 0.26 +0.2
1,987,698 + CA264_08560 0.26 -0.4
1,987,700 + CA264_08560 0.26 -0.1
1,987,701 - CA264_08560 0.26 -0.7
1,987,701 - CA264_08560 0.26 +0.7
1,987,701 - CA264_08560 0.26 -0.2
1,987,705 + CA264_08560 0.27 +0.2
1,987,705 + CA264_08560 0.27 -0.5
1,987,705 + CA264_08560 0.27 -0.6
1,987,705 + CA264_08560 0.27 +0.1
1,987,705 + CA264_08560 0.27 -0.7
1,987,706 - CA264_08560 0.27 -0.0
1,987,851 - CA264_08560 0.50 -1.1
1,987,860 + CA264_08560 0.51 -0.1
1,987,883 - CA264_08560 0.55 -0.6
1,987,918 + CA264_08560 0.61 +0.4
1,987,918 + CA264_08560 0.61 -0.4
1,987,918 + CA264_08560 0.61 +0.1
1,987,919 - CA264_08560 0.61 +0.5
1,987,919 - CA264_08560 0.61 +1.0
1,987,920 + CA264_08560 0.61 -0.0
1,987,920 + CA264_08560 0.61 -0.4
1,987,920 + CA264_08560 0.61 -0.4
1,987,921 - CA264_08560 0.61 +0.3
1,987,925 + CA264_08560 0.62 -0.4
1,987,996 + CA264_08560 0.73 -1.5
1,988,158 + -0.3
1,988,161 + -0.4
1,988,162 - +0.4
1,988,162 - -1.4
1,988,167 - -0.2
1,988,183 + -1.1
1,988,184 - -1.3
1,988,184 - -0.2
1,988,187 + -0.6
1,988,187 + +0.1
1,988,187 + -0.3
1,988,188 - +0.3
1,988,188 - -0.9
1,988,188 - -0.2
1,988,188 - +0.8
1,988,307 + CA264_08565 0.14 -0.6
1,988,307 + CA264_08565 0.14 -0.4
1,988,308 - CA264_08565 0.14 -1.3
1,988,382 - CA264_08565 0.23 -0.3
1,988,421 - CA264_08565 0.28 +1.3
1,988,548 + CA264_08565 0.44 +0.4
1,988,585 + CA264_08565 0.48 -0.6
1,988,586 - CA264_08565 0.48 -0.7
1,988,589 + CA264_08565 0.49 -0.7
1,988,589 + CA264_08565 0.49 -0.4
1,988,611 + CA264_08565 0.51 -0.2
1,988,612 - CA264_08565 0.51 -1.1
1,988,612 - CA264_08565 0.51 -1.3
1,988,613 + CA264_08565 0.51 -1.8
1,988,614 - CA264_08565 0.52 -0.9
1,988,614 - CA264_08565 0.52 +1.4
1,988,614 - CA264_08565 0.52 +0.7
1,988,616 + CA264_08565 0.52 -0.4
1,988,616 + CA264_08565 0.52 -0.8
1,988,647 + CA264_08565 0.56 -0.0
1,988,694 - CA264_08565 0.61 -0.6
1,988,753 - CA264_08565 0.68 -0.6
1,988,753 - CA264_08565 0.68 +0.9
1,988,938 - -0.6
1,988,967 + -0.6
1,989,002 - -0.4
1,989,046 - -0.1
1,989,128 + -0.2
1,989,128 + +0.8
1,989,128 + -0.3
1,989,128 + +0.3
1,989,128 + +0.4
1,989,129 - -0.2
1,989,149 + +0.4
1,989,165 - -0.8
1,989,165 - -0.1

Or see this region's nucleotide sequence