Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08545

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08540 and CA264_08545 are separated by 148 nucleotidesCA264_08545 and CA264_08550 are separated by 209 nucleotidesCA264_08550 and CA264_08555 are separated by 5 nucleotides CA264_08540: CA264_08540 - histidine phosphatase family protein, at 1,983,774 to 1,984,610 _08540 CA264_08545: CA264_08545 - 2-hydroxyacid dehydrogenase, at 1,984,759 to 1,985,751 _08545 CA264_08550: CA264_08550 - hypothetical protein, at 1,985,961 to 1,986,443 _08550 CA264_08555: CA264_08555 - hypothetical protein, at 1,986,449 to 1,987,345 _08555 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -2 -1 0 1 2at 1983.825 kb on + strandat 1983.826 kb on - strandat 1983.835 kb on - strandat 1983.914 kb on - strand, within CA264_08540at 1983.914 kb on - strand, within CA264_08540at 1983.945 kb on + strand, within CA264_08540at 1984.183 kb on + strand, within CA264_08540at 1984.218 kb on + strand, within CA264_08540at 1984.218 kb on + strand, within CA264_08540at 1984.219 kb on - strand, within CA264_08540at 1984.219 kb on - strand, within CA264_08540at 1984.307 kb on - strand, within CA264_08540at 1984.488 kb on + strand, within CA264_08540at 1984.489 kb on - strand, within CA264_08540at 1984.667 kb on + strandat 1984.668 kb on - strandat 1984.719 kb on - strandat 1984.908 kb on + strand, within CA264_08545at 1984.909 kb on - strand, within CA264_08545at 1984.973 kb on + strand, within CA264_08545at 1985.020 kb on + strand, within CA264_08545at 1985.021 kb on - strand, within CA264_08545at 1985.041 kb on + strand, within CA264_08545at 1985.041 kb on + strand, within CA264_08545at 1985.042 kb on - strand, within CA264_08545at 1985.042 kb on - strand, within CA264_08545at 1985.117 kb on + strand, within CA264_08545at 1985.118 kb on - strand, within CA264_08545at 1985.118 kb on - strand, within CA264_08545at 1985.118 kb on - strand, within CA264_08545at 1985.151 kb on + strand, within CA264_08545at 1985.152 kb on - strand, within CA264_08545at 1985.287 kb on + strand, within CA264_08545at 1985.380 kb on - strand, within CA264_08545at 1985.381 kb on + strand, within CA264_08545at 1985.381 kb on + strand, within CA264_08545at 1985.415 kb on + strand, within CA264_08545at 1985.428 kb on - strand, within CA264_08545at 1985.453 kb on + strand, within CA264_08545at 1985.477 kb on - strand, within CA264_08545at 1985.500 kb on + strand, within CA264_08545at 1985.501 kb on - strand, within CA264_08545at 1985.561 kb on - strand, within CA264_08545at 1985.676 kb on + strandat 1985.677 kb on - strandat 1985.722 kb on + strandat 1985.793 kb on + strandat 1985.874 kb on - strandat 1985.905 kb on - strandat 1985.905 kb on - strandat 1985.923 kb on + strandat 1985.955 kb on + strandat 1985.955 kb on + strandat 1985.956 kb on - strandat 1985.956 kb on - strandat 1985.957 kb on + strandat 1985.957 kb on + strandat 1985.957 kb on + strandat 1986.051 kb on - strand, within CA264_08550at 1986.122 kb on - strand, within CA264_08550at 1986.125 kb on - strand, within CA264_08550at 1986.125 kb on - strand, within CA264_08550at 1986.393 kb on + strand, within CA264_08550at 1986.393 kb on + strand, within CA264_08550at 1986.450 kb on + strandat 1986.494 kb on + strandat 1986.494 kb on + strandat 1986.494 kb on + strandat 1986.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,983,825 + -1.1
1,983,826 - -0.7
1,983,835 - -0.0
1,983,914 - CA264_08540 0.17 -0.2
1,983,914 - CA264_08540 0.17 -0.4
1,983,945 + CA264_08540 0.20 +1.6
1,984,183 + CA264_08540 0.49 -0.6
1,984,218 + CA264_08540 0.53 +1.2
1,984,218 + CA264_08540 0.53 -1.1
1,984,219 - CA264_08540 0.53 -0.6
1,984,219 - CA264_08540 0.53 +0.8
1,984,307 - CA264_08540 0.64 +0.1
1,984,488 + CA264_08540 0.85 +1.0
1,984,489 - CA264_08540 0.85 -0.4
1,984,667 + +0.9
1,984,668 - +0.4
1,984,719 - -1.1
1,984,908 + CA264_08545 0.15 +1.0
1,984,909 - CA264_08545 0.15 -0.3
1,984,973 + CA264_08545 0.22 +0.1
1,985,020 + CA264_08545 0.26 +1.2
1,985,021 - CA264_08545 0.26 -0.1
1,985,041 + CA264_08545 0.28 -1.8
1,985,041 + CA264_08545 0.28 +0.3
1,985,042 - CA264_08545 0.28 -0.9
1,985,042 - CA264_08545 0.28 -0.5
1,985,117 + CA264_08545 0.36 -0.3
1,985,118 - CA264_08545 0.36 -1.2
1,985,118 - CA264_08545 0.36 -0.1
1,985,118 - CA264_08545 0.36 -0.7
1,985,151 + CA264_08545 0.39 -0.3
1,985,152 - CA264_08545 0.40 +0.2
1,985,287 + CA264_08545 0.53 +0.0
1,985,380 - CA264_08545 0.63 -0.3
1,985,381 + CA264_08545 0.63 -0.2
1,985,381 + CA264_08545 0.63 +2.4
1,985,415 + CA264_08545 0.66 -0.4
1,985,428 - CA264_08545 0.67 -0.2
1,985,453 + CA264_08545 0.70 -1.3
1,985,477 - CA264_08545 0.72 -0.2
1,985,500 + CA264_08545 0.75 -0.6
1,985,501 - CA264_08545 0.75 +0.1
1,985,561 - CA264_08545 0.81 +1.1
1,985,676 + +0.0
1,985,677 - -0.2
1,985,722 + -1.3
1,985,793 + -0.4
1,985,874 - +0.2
1,985,905 - -1.4
1,985,905 - +0.0
1,985,923 + -0.1
1,985,955 + -0.4
1,985,955 + -0.7
1,985,956 - -0.4
1,985,956 - -0.3
1,985,957 + -0.2
1,985,957 + +0.3
1,985,957 + +0.6
1,986,051 - CA264_08550 0.19 -0.3
1,986,122 - CA264_08550 0.33 +0.6
1,986,125 - CA264_08550 0.34 -1.4
1,986,125 - CA264_08550 0.34 -0.0
1,986,393 + CA264_08550 0.89 -0.6
1,986,393 + CA264_08550 0.89 -0.4
1,986,450 + +0.6
1,986,494 + -0.1
1,986,494 + +0.6
1,986,494 + -0.8
1,986,495 - -1.3

Or see this region's nucleotide sequence