Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08280

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08270 and CA264_08275 are separated by 19 nucleotidesCA264_08275 and CA264_08280 are separated by 0 nucleotidesCA264_08280 and CA264_08285 are separated by 3 nucleotides CA264_08270: CA264_08270 - Fe-S cluster assembly protein SufB, at 1,910,649 to 1,912,103 _08270 CA264_08275: CA264_08275 - ABC transporter ATP-binding protein, at 1,912,123 to 1,912,893 _08275 CA264_08280: CA264_08280 - Fe-S cluster assembly protein SufD, at 1,912,894 to 1,914,234 _08280 CA264_08285: CA264_08285 - aminotransferase, at 1,914,238 to 1,915,488 _08285 Position (kb) 1912 1913 1914 1915Strain fitness (log2 ratio) -1 0 1 2 3at 1911.908 kb on - strand, within CA264_08270at 1911.908 kb on - strand, within CA264_08270at 1911.973 kb on + strandat 1911.973 kb on + strandat 1911.974 kb on - strandat 1912.012 kb on - strandat 1912.073 kb on - strandat 1912.096 kb on + strandat 1912.097 kb on - strandat 1912.097 kb on - strandat 1912.097 kb on - strandat 1912.097 kb on - strandat 1912.104 kb on + strandat 1912.127 kb on + strandat 1912.154 kb on + strandat 1912.181 kb on + strandat 1912.181 kb on + strandat 1912.181 kb on + strandat 1912.208 kb on + strand, within CA264_08275at 1912.280 kb on - strand, within CA264_08275at 1912.280 kb on - strand, within CA264_08275at 1912.281 kb on + strand, within CA264_08275at 1912.281 kb on + strand, within CA264_08275at 1912.286 kb on + strand, within CA264_08275at 1912.286 kb on + strand, within CA264_08275at 1912.343 kb on + strand, within CA264_08275at 1912.406 kb on - strand, within CA264_08275at 1912.440 kb on - strand, within CA264_08275at 1912.891 kb on + strandat 1912.891 kb on + strandat 1912.892 kb on - strandat 1912.892 kb on - strandat 1912.911 kb on + strandat 1912.914 kb on - strandat 1912.914 kb on - strandat 1912.989 kb on - strandat 1912.997 kb on + strandat 1913.066 kb on - strand, within CA264_08280at 1913.067 kb on + strand, within CA264_08280at 1913.068 kb on - strand, within CA264_08280at 1913.177 kb on - strand, within CA264_08280at 1913.256 kb on + strand, within CA264_08280at 1913.294 kb on - strand, within CA264_08280at 1913.294 kb on - strand, within CA264_08280at 1913.302 kb on - strand, within CA264_08280at 1913.307 kb on - strand, within CA264_08280at 1913.401 kb on - strand, within CA264_08280at 1913.561 kb on + strand, within CA264_08280at 1913.593 kb on + strand, within CA264_08280at 1913.594 kb on - strand, within CA264_08280at 1913.630 kb on + strand, within CA264_08280at 1913.631 kb on - strand, within CA264_08280at 1913.668 kb on + strand, within CA264_08280at 1913.678 kb on - strand, within CA264_08280at 1913.678 kb on - strand, within CA264_08280at 1913.678 kb on - strand, within CA264_08280at 1913.727 kb on - strand, within CA264_08280at 1913.727 kb on - strand, within CA264_08280at 1913.761 kb on + strand, within CA264_08280at 1913.805 kb on + strand, within CA264_08280at 1913.805 kb on + strand, within CA264_08280at 1913.806 kb on - strand, within CA264_08280at 1913.806 kb on - strand, within CA264_08280at 1913.890 kb on - strand, within CA264_08280at 1913.890 kb on - strand, within CA264_08280at 1914.005 kb on - strand, within CA264_08280at 1914.100 kb on - strand, within CA264_08280at 1914.201 kb on + strandat 1914.202 kb on - strandat 1914.202 kb on - strandat 1914.203 kb on + strandat 1914.203 kb on + strandat 1914.203 kb on + strandat 1914.204 kb on - strandat 1914.204 kb on - strandat 1914.204 kb on - strandat 1914.230 kb on + strandat 1914.231 kb on - strandat 1914.232 kb on + strandat 1914.280 kb on - strandat 1914.404 kb on - strand, within CA264_08285at 1914.404 kb on - strand, within CA264_08285at 1914.415 kb on + strand, within CA264_08285at 1914.415 kb on + strand, within CA264_08285at 1914.537 kb on + strand, within CA264_08285at 1914.781 kb on + strand, within CA264_08285at 1914.781 kb on + strand, within CA264_08285at 1914.781 kb on + strand, within CA264_08285at 1914.782 kb on - strand, within CA264_08285at 1914.782 kb on - strand, within CA264_08285at 1914.786 kb on - strand, within CA264_08285at 1914.896 kb on + strand, within CA264_08285at 1914.896 kb on + strand, within CA264_08285at 1914.902 kb on + strand, within CA264_08285at 1914.902 kb on + strand, within CA264_08285at 1914.903 kb on - strand, within CA264_08285at 1914.949 kb on + strand, within CA264_08285at 1915.063 kb on + strand, within CA264_08285at 1915.064 kb on - strand, within CA264_08285at 1915.065 kb on + strand, within CA264_08285at 1915.199 kb on - strand, within CA264_08285

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,911,908 - CA264_08270 0.87 -0.6
1,911,908 - CA264_08270 0.87 -0.5
1,911,973 + +0.8
1,911,973 + +1.4
1,911,974 - +0.3
1,912,012 - +0.8
1,912,073 - +0.5
1,912,096 + -0.1
1,912,097 - +0.4
1,912,097 - +0.9
1,912,097 - +1.0
1,912,097 - +0.2
1,912,104 + -1.3
1,912,127 + +0.6
1,912,154 + +0.5
1,912,181 + +0.8
1,912,181 + -0.4
1,912,181 + +0.7
1,912,208 + CA264_08275 0.11 +1.4
1,912,280 - CA264_08275 0.20 -0.5
1,912,280 - CA264_08275 0.20 +1.6
1,912,281 + CA264_08275 0.20 +0.6
1,912,281 + CA264_08275 0.20 -0.9
1,912,286 + CA264_08275 0.21 -0.4
1,912,286 + CA264_08275 0.21 +1.4
1,912,343 + CA264_08275 0.29 +0.4
1,912,406 - CA264_08275 0.37 +0.9
1,912,440 - CA264_08275 0.41 +0.9
1,912,891 + +0.0
1,912,891 + -0.6
1,912,892 - +0.7
1,912,892 - +0.1
1,912,911 + +0.0
1,912,914 - +0.1
1,912,914 - +0.3
1,912,989 - -1.2
1,912,997 + +0.3
1,913,066 - CA264_08280 0.13 +1.2
1,913,067 + CA264_08280 0.13 +0.4
1,913,068 - CA264_08280 0.13 +0.6
1,913,177 - CA264_08280 0.21 +2.6
1,913,256 + CA264_08280 0.27 +0.0
1,913,294 - CA264_08280 0.30 +0.7
1,913,294 - CA264_08280 0.30 -0.2
1,913,302 - CA264_08280 0.30 -0.6
1,913,307 - CA264_08280 0.31 +0.3
1,913,401 - CA264_08280 0.38 +1.1
1,913,561 + CA264_08280 0.50 +1.1
1,913,593 + CA264_08280 0.52 +0.2
1,913,594 - CA264_08280 0.52 +0.2
1,913,630 + CA264_08280 0.55 +3.6
1,913,631 - CA264_08280 0.55 -0.9
1,913,668 + CA264_08280 0.58 -1.4
1,913,678 - CA264_08280 0.58 +0.2
1,913,678 - CA264_08280 0.58 -1.2
1,913,678 - CA264_08280 0.58 +1.5
1,913,727 - CA264_08280 0.62 +0.7
1,913,727 - CA264_08280 0.62 +0.6
1,913,761 + CA264_08280 0.65 +1.2
1,913,805 + CA264_08280 0.68 +1.0
1,913,805 + CA264_08280 0.68 +0.3
1,913,806 - CA264_08280 0.68 +1.9
1,913,806 - CA264_08280 0.68 +0.2
1,913,890 - CA264_08280 0.74 +0.5
1,913,890 - CA264_08280 0.74 +0.4
1,914,005 - CA264_08280 0.83 +0.3
1,914,100 - CA264_08280 0.90 +0.8
1,914,201 + +0.4
1,914,202 - +0.0
1,914,202 - +0.0
1,914,203 + +0.4
1,914,203 + +0.5
1,914,203 + +1.0
1,914,204 - -0.2
1,914,204 - -0.7
1,914,204 - -0.2
1,914,230 + +0.6
1,914,231 - +0.4
1,914,232 + -0.4
1,914,280 - -0.2
1,914,404 - CA264_08285 0.13 -1.3
1,914,404 - CA264_08285 0.13 -0.3
1,914,415 + CA264_08285 0.14 -1.2
1,914,415 + CA264_08285 0.14 +0.3
1,914,537 + CA264_08285 0.24 +0.5
1,914,781 + CA264_08285 0.43 +1.4
1,914,781 + CA264_08285 0.43 -0.3
1,914,781 + CA264_08285 0.43 +0.4
1,914,782 - CA264_08285 0.43 +0.3
1,914,782 - CA264_08285 0.43 -0.9
1,914,786 - CA264_08285 0.44 +0.2
1,914,896 + CA264_08285 0.53 +1.0
1,914,896 + CA264_08285 0.53 +0.3
1,914,902 + CA264_08285 0.53 +0.0
1,914,902 + CA264_08285 0.53 +0.5
1,914,903 - CA264_08285 0.53 +1.7
1,914,949 + CA264_08285 0.57 +1.2
1,915,063 + CA264_08285 0.66 +0.9
1,915,064 - CA264_08285 0.66 +0.5
1,915,065 + CA264_08285 0.66 -0.1
1,915,199 - CA264_08285 0.77 +0.1

Or see this region's nucleotide sequence