Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07980

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07975 and CA264_07980 are separated by 2 nucleotidesCA264_07980 and CA264_07985 are separated by 30 nucleotides CA264_07975: CA264_07975 - pseudaminic acid synthase, at 1,844,349 to 1,845,401 _07975 CA264_07980: CA264_07980 - PIG-L family deacetylase, at 1,845,404 to 1,846,120 _07980 CA264_07985: CA264_07985 - hypothetical protein, at 1,846,151 to 1,847,428 _07985 Position (kb) 1845 1846 1847Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1844.419 kb on + strandat 1844.442 kb on + strandat 1844.464 kb on + strand, within CA264_07975at 1844.464 kb on + strand, within CA264_07975at 1844.465 kb on - strand, within CA264_07975at 1844.465 kb on - strand, within CA264_07975at 1844.503 kb on + strand, within CA264_07975at 1844.570 kb on + strand, within CA264_07975at 1844.616 kb on + strand, within CA264_07975at 1844.617 kb on - strand, within CA264_07975at 1844.670 kb on - strand, within CA264_07975at 1844.731 kb on + strand, within CA264_07975at 1844.731 kb on + strand, within CA264_07975at 1844.739 kb on + strand, within CA264_07975at 1844.739 kb on + strand, within CA264_07975at 1844.746 kb on + strand, within CA264_07975at 1844.746 kb on + strand, within CA264_07975at 1844.747 kb on - strand, within CA264_07975at 1844.789 kb on - strand, within CA264_07975at 1844.815 kb on + strand, within CA264_07975at 1844.825 kb on + strand, within CA264_07975at 1844.825 kb on + strand, within CA264_07975at 1844.843 kb on + strand, within CA264_07975at 1844.844 kb on - strand, within CA264_07975at 1844.846 kb on - strand, within CA264_07975at 1844.867 kb on + strand, within CA264_07975at 1844.867 kb on + strand, within CA264_07975at 1844.921 kb on + strand, within CA264_07975at 1844.922 kb on - strand, within CA264_07975at 1844.928 kb on - strand, within CA264_07975at 1844.938 kb on + strand, within CA264_07975at 1844.939 kb on - strand, within CA264_07975at 1844.962 kb on + strand, within CA264_07975at 1844.963 kb on - strand, within CA264_07975at 1844.963 kb on - strand, within CA264_07975at 1844.969 kb on + strand, within CA264_07975at 1844.970 kb on - strand, within CA264_07975at 1844.974 kb on - strand, within CA264_07975at 1844.974 kb on - strand, within CA264_07975at 1845.017 kb on + strand, within CA264_07975at 1845.017 kb on + strand, within CA264_07975at 1845.018 kb on - strand, within CA264_07975at 1845.019 kb on + strand, within CA264_07975at 1845.019 kb on + strand, within CA264_07975at 1845.020 kb on - strand, within CA264_07975at 1845.020 kb on - strand, within CA264_07975at 1845.026 kb on - strand, within CA264_07975at 1845.069 kb on - strand, within CA264_07975at 1845.110 kb on + strand, within CA264_07975at 1845.235 kb on - strand, within CA264_07975at 1845.329 kb on + strandat 1845.330 kb on - strandat 1845.361 kb on + strandat 1845.399 kb on + strandat 1845.400 kb on - strandat 1845.490 kb on + strand, within CA264_07980at 1845.491 kb on - strand, within CA264_07980at 1845.547 kb on + strand, within CA264_07980at 1845.548 kb on - strand, within CA264_07980at 1845.617 kb on - strand, within CA264_07980at 1845.699 kb on + strand, within CA264_07980at 1845.703 kb on + strand, within CA264_07980at 1845.703 kb on + strand, within CA264_07980at 1845.704 kb on - strand, within CA264_07980at 1845.704 kb on - strand, within CA264_07980at 1845.813 kb on + strand, within CA264_07980at 1845.813 kb on + strand, within CA264_07980at 1845.814 kb on - strand, within CA264_07980at 1845.855 kb on + strand, within CA264_07980at 1845.855 kb on + strand, within CA264_07980at 1845.922 kb on + strand, within CA264_07980at 1845.923 kb on - strand, within CA264_07980at 1845.944 kb on - strand, within CA264_07980at 1845.967 kb on - strand, within CA264_07980at 1846.038 kb on + strand, within CA264_07980at 1846.038 kb on + strand, within CA264_07980at 1846.039 kb on - strand, within CA264_07980at 1846.039 kb on - strand, within CA264_07980at 1846.065 kb on + strandat 1846.066 kb on - strandat 1846.118 kb on + strandat 1846.141 kb on + strandat 1846.141 kb on + strandat 1846.147 kb on - strandat 1846.168 kb on + strandat 1846.169 kb on - strandat 1846.169 kb on - strandat 1846.173 kb on - strandat 1846.173 kb on - strandat 1846.173 kb on - strandat 1846.185 kb on + strandat 1846.186 kb on - strandat 1846.274 kb on - strandat 1846.357 kb on - strand, within CA264_07985at 1846.364 kb on + strand, within CA264_07985at 1846.365 kb on - strand, within CA264_07985at 1846.365 kb on - strand, within CA264_07985at 1846.423 kb on + strand, within CA264_07985at 1846.424 kb on - strand, within CA264_07985at 1846.429 kb on - strand, within CA264_07985at 1846.429 kb on - strand, within CA264_07985at 1846.464 kb on - strand, within CA264_07985at 1846.509 kb on - strand, within CA264_07985at 1846.546 kb on - strand, within CA264_07985at 1846.551 kb on - strand, within CA264_07985at 1846.565 kb on - strand, within CA264_07985at 1846.582 kb on + strand, within CA264_07985at 1846.582 kb on + strand, within CA264_07985at 1846.584 kb on + strand, within CA264_07985at 1846.587 kb on + strand, within CA264_07985at 1846.587 kb on + strand, within CA264_07985at 1846.587 kb on + strand, within CA264_07985at 1846.587 kb on + strand, within CA264_07985at 1846.607 kb on + strand, within CA264_07985at 1846.617 kb on - strand, within CA264_07985at 1846.623 kb on - strand, within CA264_07985at 1846.637 kb on + strand, within CA264_07985at 1846.640 kb on - strand, within CA264_07985at 1846.640 kb on - strand, within CA264_07985at 1846.698 kb on + strand, within CA264_07985at 1846.699 kb on - strand, within CA264_07985at 1846.749 kb on + strand, within CA264_07985at 1846.749 kb on + strand, within CA264_07985at 1846.789 kb on - strand, within CA264_07985at 1846.817 kb on + strand, within CA264_07985at 1846.819 kb on + strand, within CA264_07985at 1846.880 kb on + strand, within CA264_07985at 1846.916 kb on - strand, within CA264_07985at 1846.916 kb on - strand, within CA264_07985at 1847.001 kb on + strand, within CA264_07985at 1847.090 kb on - strand, within CA264_07985

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,844,419 + +0.7
1,844,442 + -2.2
1,844,464 + CA264_07975 0.11 +0.4
1,844,464 + CA264_07975 0.11 -1.8
1,844,465 - CA264_07975 0.11 +0.6
1,844,465 - CA264_07975 0.11 +0.3
1,844,503 + CA264_07975 0.15 +3.0
1,844,570 + CA264_07975 0.21 -0.9
1,844,616 + CA264_07975 0.25 -0.4
1,844,617 - CA264_07975 0.25 +0.2
1,844,670 - CA264_07975 0.30 -0.8
1,844,731 + CA264_07975 0.36 -0.2
1,844,731 + CA264_07975 0.36 +0.6
1,844,739 + CA264_07975 0.37 -1.1
1,844,739 + CA264_07975 0.37 -1.0
1,844,746 + CA264_07975 0.38 +0.4
1,844,746 + CA264_07975 0.38 -0.8
1,844,747 - CA264_07975 0.38 -0.5
1,844,789 - CA264_07975 0.42 -0.6
1,844,815 + CA264_07975 0.44 -0.8
1,844,825 + CA264_07975 0.45 -0.1
1,844,825 + CA264_07975 0.45 -0.9
1,844,843 + CA264_07975 0.47 -1.8
1,844,844 - CA264_07975 0.47 -0.6
1,844,846 - CA264_07975 0.47 -1.3
1,844,867 + CA264_07975 0.49 -0.4
1,844,867 + CA264_07975 0.49 +0.2
1,844,921 + CA264_07975 0.54 -0.4
1,844,922 - CA264_07975 0.54 -0.7
1,844,928 - CA264_07975 0.55 -1.1
1,844,938 + CA264_07975 0.56 -0.6
1,844,939 - CA264_07975 0.56 +0.2
1,844,962 + CA264_07975 0.58 -0.5
1,844,963 - CA264_07975 0.58 -0.5
1,844,963 - CA264_07975 0.58 -0.4
1,844,969 + CA264_07975 0.59 -0.1
1,844,970 - CA264_07975 0.59 -0.4
1,844,974 - CA264_07975 0.59 +0.7
1,844,974 - CA264_07975 0.59 -1.3
1,845,017 + CA264_07975 0.63 -0.4
1,845,017 + CA264_07975 0.63 -0.5
1,845,018 - CA264_07975 0.64 -1.1
1,845,019 + CA264_07975 0.64 -0.1
1,845,019 + CA264_07975 0.64 -1.0
1,845,020 - CA264_07975 0.64 +0.6
1,845,020 - CA264_07975 0.64 -0.6
1,845,026 - CA264_07975 0.64 -0.7
1,845,069 - CA264_07975 0.68 +0.6
1,845,110 + CA264_07975 0.72 -1.2
1,845,235 - CA264_07975 0.84 -0.2
1,845,329 + -0.2
1,845,330 - -1.2
1,845,361 + -0.4
1,845,399 + -0.2
1,845,400 - -0.9
1,845,490 + CA264_07980 0.12 -0.1
1,845,491 - CA264_07980 0.12 +0.6
1,845,547 + CA264_07980 0.20 -0.2
1,845,548 - CA264_07980 0.20 -0.3
1,845,617 - CA264_07980 0.30 -0.2
1,845,699 + CA264_07980 0.41 -1.3
1,845,703 + CA264_07980 0.42 -0.5
1,845,703 + CA264_07980 0.42 -1.0
1,845,704 - CA264_07980 0.42 -1.4
1,845,704 - CA264_07980 0.42 -0.9
1,845,813 + CA264_07980 0.57 -0.3
1,845,813 + CA264_07980 0.57 -1.0
1,845,814 - CA264_07980 0.57 +0.4
1,845,855 + CA264_07980 0.63 -1.0
1,845,855 + CA264_07980 0.63 -1.4
1,845,922 + CA264_07980 0.72 +0.8
1,845,923 - CA264_07980 0.72 -0.6
1,845,944 - CA264_07980 0.75 +0.8
1,845,967 - CA264_07980 0.79 -0.8
1,846,038 + CA264_07980 0.88 +0.3
1,846,038 + CA264_07980 0.88 -1.2
1,846,039 - CA264_07980 0.89 -0.4
1,846,039 - CA264_07980 0.89 -1.6
1,846,065 + +0.3
1,846,066 - -0.0
1,846,118 + -0.2
1,846,141 + +0.4
1,846,141 + +0.3
1,846,147 - +0.0
1,846,168 + -1.3
1,846,169 - -1.3
1,846,169 - -1.3
1,846,173 - +0.4
1,846,173 - -0.7
1,846,173 - -1.0
1,846,185 + -0.1
1,846,186 - -1.1
1,846,274 - -0.5
1,846,357 - CA264_07985 0.16 -0.6
1,846,364 + CA264_07985 0.17 -0.4
1,846,365 - CA264_07985 0.17 -0.1
1,846,365 - CA264_07985 0.17 -0.1
1,846,423 + CA264_07985 0.21 -0.5
1,846,424 - CA264_07985 0.21 -0.1
1,846,429 - CA264_07985 0.22 +0.4
1,846,429 - CA264_07985 0.22 +0.2
1,846,464 - CA264_07985 0.24 -0.0
1,846,509 - CA264_07985 0.28 -0.3
1,846,546 - CA264_07985 0.31 -0.4
1,846,551 - CA264_07985 0.31 -0.3
1,846,565 - CA264_07985 0.32 -0.6
1,846,582 + CA264_07985 0.34 -0.0
1,846,582 + CA264_07985 0.34 -0.1
1,846,584 + CA264_07985 0.34 -0.1
1,846,587 + CA264_07985 0.34 -0.7
1,846,587 + CA264_07985 0.34 +0.5
1,846,587 + CA264_07985 0.34 -0.5
1,846,587 + CA264_07985 0.34 +0.1
1,846,607 + CA264_07985 0.36 -0.2
1,846,617 - CA264_07985 0.36 -0.8
1,846,623 - CA264_07985 0.37 -2.1
1,846,637 + CA264_07985 0.38 +1.2
1,846,640 - CA264_07985 0.38 -0.6
1,846,640 - CA264_07985 0.38 +2.6
1,846,698 + CA264_07985 0.43 +0.1
1,846,699 - CA264_07985 0.43 -0.0
1,846,749 + CA264_07985 0.47 +0.4
1,846,749 + CA264_07985 0.47 -0.0
1,846,789 - CA264_07985 0.50 -0.3
1,846,817 + CA264_07985 0.52 -0.6
1,846,819 + CA264_07985 0.52 +0.2
1,846,880 + CA264_07985 0.57 +0.5
1,846,916 - CA264_07985 0.60 -1.1
1,846,916 - CA264_07985 0.60 -0.8
1,847,001 + CA264_07985 0.67 -0.2
1,847,090 - CA264_07985 0.73 -0.3

Or see this region's nucleotide sequence