Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07790

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07780 and CA264_07785 are separated by 45 nucleotidesCA264_07785 and CA264_07790 are separated by 199 nucleotidesCA264_07790 and CA264_07795 are separated by 309 nucleotides CA264_07780: CA264_07780 - hypothetical protein, at 1,801,432 to 1,801,839 _07780 CA264_07785: CA264_07785 - hypothetical protein, at 1,801,885 to 1,802,451 _07785 CA264_07790: CA264_07790 - ankryin, at 1,802,651 to 1,804,297 _07790 CA264_07795: CA264_07795 - ATP-dependent DNA helicase, at 1,804,607 to 1,806,844 _07795 Position (kb) 1802 1803 1804 1805Strain fitness (log2 ratio) -1 0 1 2at 1801.747 kb on + strand, within CA264_07780at 1801.748 kb on - strand, within CA264_07780at 1801.774 kb on + strand, within CA264_07780at 1801.820 kb on + strandat 1801.820 kb on + strandat 1801.874 kb on - strandat 1801.879 kb on + strandat 1801.971 kb on - strand, within CA264_07785at 1801.972 kb on + strand, within CA264_07785at 1801.972 kb on + strand, within CA264_07785at 1802.033 kb on + strand, within CA264_07785at 1802.034 kb on - strand, within CA264_07785at 1802.057 kb on + strand, within CA264_07785at 1802.058 kb on - strand, within CA264_07785at 1802.058 kb on - strand, within CA264_07785at 1802.058 kb on - strand, within CA264_07785at 1802.123 kb on + strand, within CA264_07785at 1802.127 kb on - strand, within CA264_07785at 1802.168 kb on + strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.237 kb on + strand, within CA264_07785at 1802.282 kb on + strand, within CA264_07785at 1802.282 kb on + strand, within CA264_07785at 1802.283 kb on - strand, within CA264_07785at 1802.301 kb on - strand, within CA264_07785at 1802.388 kb on + strand, within CA264_07785at 1802.389 kb on - strand, within CA264_07785at 1802.392 kb on - strand, within CA264_07785at 1802.392 kb on - strand, within CA264_07785at 1802.392 kb on - strand, within CA264_07785at 1802.446 kb on + strandat 1802.446 kb on + strandat 1802.447 kb on - strandat 1802.447 kb on - strandat 1802.447 kb on - strandat 1802.447 kb on - strandat 1802.465 kb on + strandat 1802.472 kb on + strandat 1802.514 kb on + strandat 1802.532 kb on - strandat 1802.542 kb on + strandat 1802.653 kb on - strandat 1802.688 kb on - strandat 1802.688 kb on - strandat 1802.713 kb on + strandat 1802.713 kb on + strandat 1802.714 kb on - strandat 1802.714 kb on - strandat 1802.716 kb on - strandat 1802.784 kb on - strandat 1802.784 kb on - strandat 1802.842 kb on + strand, within CA264_07790at 1802.842 kb on + strand, within CA264_07790at 1802.902 kb on + strand, within CA264_07790at 1803.060 kb on + strand, within CA264_07790at 1803.060 kb on + strand, within CA264_07790at 1803.060 kb on + strand, within CA264_07790at 1803.060 kb on + strand, within CA264_07790at 1803.061 kb on - strand, within CA264_07790at 1803.061 kb on - strand, within CA264_07790at 1803.061 kb on - strand, within CA264_07790at 1803.169 kb on - strand, within CA264_07790at 1803.262 kb on + strand, within CA264_07790at 1803.353 kb on + strand, within CA264_07790at 1803.353 kb on + strand, within CA264_07790at 1803.373 kb on - strand, within CA264_07790at 1803.476 kb on - strand, within CA264_07790at 1803.567 kb on + strand, within CA264_07790at 1803.588 kb on + strand, within CA264_07790at 1803.627 kb on + strand, within CA264_07790at 1803.672 kb on + strand, within CA264_07790at 1803.672 kb on + strand, within CA264_07790at 1803.672 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.855 kb on + strand, within CA264_07790at 1803.856 kb on - strand, within CA264_07790at 1803.856 kb on - strand, within CA264_07790at 1803.926 kb on + strand, within CA264_07790at 1803.943 kb on - strand, within CA264_07790at 1803.985 kb on - strand, within CA264_07790at 1804.054 kb on + strand, within CA264_07790at 1804.055 kb on - strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.060 kb on - strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.063 kb on - strand, within CA264_07790at 1804.063 kb on - strand, within CA264_07790at 1804.063 kb on - strand, within CA264_07790at 1804.321 kb on + strandat 1804.323 kb on + strandat 1804.324 kb on - strandat 1804.345 kb on + strandat 1804.345 kb on + strandat 1804.428 kb on + strandat 1804.429 kb on - strandat 1804.433 kb on + strandat 1804.440 kb on + strandat 1804.442 kb on + strandat 1804.443 kb on - strandat 1804.618 kb on - strandat 1804.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,801,747 + CA264_07780 0.77 -0.1
1,801,748 - CA264_07780 0.77 -0.2
1,801,774 + CA264_07780 0.84 +0.0
1,801,820 + +0.5
1,801,820 + +1.1
1,801,874 - -1.5
1,801,879 + +0.1
1,801,971 - CA264_07785 0.15 +0.2
1,801,972 + CA264_07785 0.15 +1.6
1,801,972 + CA264_07785 0.15 -0.2
1,802,033 + CA264_07785 0.26 +0.6
1,802,034 - CA264_07785 0.26 -1.4
1,802,057 + CA264_07785 0.30 +0.3
1,802,058 - CA264_07785 0.31 +0.7
1,802,058 - CA264_07785 0.31 -0.3
1,802,058 - CA264_07785 0.31 +0.0
1,802,123 + CA264_07785 0.42 +0.2
1,802,127 - CA264_07785 0.43 -0.1
1,802,168 + CA264_07785 0.50 -0.4
1,802,169 - CA264_07785 0.50 -0.5
1,802,169 - CA264_07785 0.50 -0.3
1,802,169 - CA264_07785 0.50 +0.3
1,802,169 - CA264_07785 0.50 +1.5
1,802,237 + CA264_07785 0.62 +0.0
1,802,282 + CA264_07785 0.70 +0.5
1,802,282 + CA264_07785 0.70 +2.2
1,802,283 - CA264_07785 0.70 +0.1
1,802,301 - CA264_07785 0.73 +2.5
1,802,388 + CA264_07785 0.89 +0.4
1,802,389 - CA264_07785 0.89 +0.5
1,802,392 - CA264_07785 0.89 +0.9
1,802,392 - CA264_07785 0.89 -0.8
1,802,392 - CA264_07785 0.89 -0.2
1,802,446 + -0.1
1,802,446 + +0.6
1,802,447 - +1.0
1,802,447 - -0.9
1,802,447 - -0.3
1,802,447 - -0.8
1,802,465 + +0.0
1,802,472 + -0.8
1,802,514 + -0.6
1,802,532 - -1.7
1,802,542 + -0.3
1,802,653 - -1.2
1,802,688 - -0.3
1,802,688 - -0.1
1,802,713 + +0.5
1,802,713 + +0.7
1,802,714 - -0.4
1,802,714 - +0.0
1,802,716 - -0.8
1,802,784 - -1.0
1,802,784 - -1.0
1,802,842 + CA264_07790 0.12 +0.4
1,802,842 + CA264_07790 0.12 +0.7
1,802,902 + CA264_07790 0.15 +0.7
1,803,060 + CA264_07790 0.25 +0.9
1,803,060 + CA264_07790 0.25 +1.0
1,803,060 + CA264_07790 0.25 +1.1
1,803,060 + CA264_07790 0.25 +0.2
1,803,061 - CA264_07790 0.25 +0.1
1,803,061 - CA264_07790 0.25 -0.3
1,803,061 - CA264_07790 0.25 +1.0
1,803,169 - CA264_07790 0.31 -0.4
1,803,262 + CA264_07790 0.37 +0.9
1,803,353 + CA264_07790 0.43 +1.7
1,803,353 + CA264_07790 0.43 +1.2
1,803,373 - CA264_07790 0.44 +0.4
1,803,476 - CA264_07790 0.50 +1.2
1,803,567 + CA264_07790 0.56 +1.9
1,803,588 + CA264_07790 0.57 -0.8
1,803,627 + CA264_07790 0.59 +1.3
1,803,672 + CA264_07790 0.62 +1.5
1,803,672 + CA264_07790 0.62 +0.4
1,803,672 + CA264_07790 0.62 +1.0
1,803,675 + CA264_07790 0.62 +0.2
1,803,675 + CA264_07790 0.62 +1.7
1,803,675 + CA264_07790 0.62 +1.2
1,803,675 + CA264_07790 0.62 +1.1
1,803,676 - CA264_07790 0.62 +1.0
1,803,676 - CA264_07790 0.62 +0.1
1,803,676 - CA264_07790 0.62 +0.4
1,803,676 - CA264_07790 0.62 +0.8
1,803,676 - CA264_07790 0.62 +0.2
1,803,855 + CA264_07790 0.73 +1.4
1,803,856 - CA264_07790 0.73 +1.5
1,803,856 - CA264_07790 0.73 +1.4
1,803,926 + CA264_07790 0.77 +0.7
1,803,943 - CA264_07790 0.78 +1.1
1,803,985 - CA264_07790 0.81 +1.0
1,804,054 + CA264_07790 0.85 +1.7
1,804,055 - CA264_07790 0.85 +0.7
1,804,059 + CA264_07790 0.85 +1.6
1,804,059 + CA264_07790 0.85 -0.5
1,804,059 + CA264_07790 0.85 +1.9
1,804,059 + CA264_07790 0.85 +1.4
1,804,060 - CA264_07790 0.86 +1.0
1,804,062 + CA264_07790 0.86 +1.7
1,804,062 + CA264_07790 0.86 +1.7
1,804,062 + CA264_07790 0.86 +1.1
1,804,062 + CA264_07790 0.86 +1.1
1,804,062 + CA264_07790 0.86 +1.4
1,804,063 - CA264_07790 0.86 +1.1
1,804,063 - CA264_07790 0.86 +1.1
1,804,063 - CA264_07790 0.86 +0.9
1,804,321 + +0.9
1,804,323 + +2.0
1,804,324 - -0.0
1,804,345 + +1.8
1,804,345 + +2.7
1,804,428 + +2.7
1,804,429 - +0.8
1,804,433 + +0.7
1,804,440 + -0.4
1,804,442 + +2.2
1,804,443 - +0.7
1,804,618 - +0.9
1,804,618 - +0.9

Or see this region's nucleotide sequence