Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07685

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07675 and CA264_07680 are separated by 120 nucleotidesCA264_07680 and CA264_07685 are separated by 30 nucleotidesCA264_07685 and CA264_07690 overlap by 23 nucleotidesCA264_07690 and CA264_07695 are separated by 31 nucleotidesCA264_07695 and CA264_07700 are separated by 103 nucleotides CA264_07675: CA264_07675 - MATE family efflux transporter, at 1,781,000 to 1,782,394 _07675 CA264_07680: CA264_07680 - N-acetyltransferase, at 1,782,515 to 1,782,985 _07680 CA264_07685: CA264_07685 - aminotransferase class I and II, at 1,783,016 to 1,783,816 _07685 CA264_07690: CA264_07690 - hypothetical protein, at 1,783,794 to 1,784,177 _07690 CA264_07695: CA264_07695 - thioesterase, at 1,784,209 to 1,784,616 _07695 CA264_07700: CA264_07700 - hypothetical protein, at 1,784,720 to 1,784,923 _07700 Position (kb) 1783 1784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1782.147 kb on - strand, within CA264_07675at 1782.187 kb on + strand, within CA264_07675at 1782.247 kb on - strand, within CA264_07675at 1782.263 kb on + strandat 1782.276 kb on + strandat 1782.303 kb on + strandat 1782.304 kb on - strandat 1782.391 kb on - strandat 1782.391 kb on - strandat 1782.391 kb on - strandat 1782.393 kb on - strandat 1782.409 kb on + strandat 1782.440 kb on + strandat 1782.471 kb on - strandat 1782.472 kb on + strandat 1782.501 kb on - strandat 1782.648 kb on + strand, within CA264_07680at 1782.648 kb on + strand, within CA264_07680at 1782.648 kb on + strand, within CA264_07680at 1782.648 kb on + strand, within CA264_07680at 1782.648 kb on + strand, within CA264_07680at 1782.649 kb on - strand, within CA264_07680at 1782.668 kb on + strand, within CA264_07680at 1782.669 kb on - strand, within CA264_07680at 1782.669 kb on - strand, within CA264_07680at 1782.669 kb on - strand, within CA264_07680at 1782.671 kb on - strand, within CA264_07680at 1782.711 kb on - strand, within CA264_07680at 1782.712 kb on + strand, within CA264_07680at 1782.713 kb on - strand, within CA264_07680at 1782.713 kb on - strand, within CA264_07680at 1782.824 kb on + strand, within CA264_07680at 1782.826 kb on + strand, within CA264_07680at 1782.853 kb on - strand, within CA264_07680at 1782.879 kb on - strand, within CA264_07680at 1782.896 kb on - strand, within CA264_07680at 1782.911 kb on + strand, within CA264_07680at 1782.912 kb on - strand, within CA264_07680at 1782.947 kb on - strandat 1782.947 kb on - strandat 1782.984 kb on - strandat 1782.989 kb on + strandat 1782.989 kb on + strandat 1782.989 kb on + strandat 1782.989 kb on + strandat 1782.990 kb on - strandat 1782.990 kb on - strandat 1782.997 kb on + strandat 1783.022 kb on + strandat 1783.022 kb on + strandat 1783.023 kb on - strandat 1783.366 kb on - strand, within CA264_07685at 1783.374 kb on + strand, within CA264_07685at 1783.733 kb on + strand, within CA264_07685at 1783.734 kb on - strand, within CA264_07685at 1783.766 kb on - strandat 1783.773 kb on + strandat 1783.777 kb on + strandat 1783.777 kb on + strandat 1783.811 kb on - strandat 1784.176 kb on - strandat 1784.216 kb on + strandat 1784.216 kb on + strandat 1784.217 kb on - strandat 1784.228 kb on + strandat 1784.228 kb on + strandat 1784.228 kb on + strandat 1784.229 kb on - strandat 1784.229 kb on - strandat 1784.388 kb on - strand, within CA264_07695at 1784.390 kb on - strand, within CA264_07695at 1784.400 kb on - strand, within CA264_07695at 1784.400 kb on - strand, within CA264_07695at 1784.400 kb on - strand, within CA264_07695at 1784.445 kb on + strand, within CA264_07695at 1784.542 kb on - strand, within CA264_07695at 1784.549 kb on - strand, within CA264_07695at 1784.594 kb on - strandat 1784.615 kb on - strandat 1784.627 kb on + strandat 1784.640 kb on + strandat 1784.715 kb on - strandat 1784.715 kb on - strandat 1784.775 kb on + strand, within CA264_07700at 1784.775 kb on + strand, within CA264_07700at 1784.775 kb on + strand, within CA264_07700at 1784.775 kb on + strand, within CA264_07700at 1784.792 kb on + strand, within CA264_07700at 1784.792 kb on + strand, within CA264_07700at 1784.799 kb on + strand, within CA264_07700at 1784.799 kb on + strand, within CA264_07700at 1784.800 kb on - strand, within CA264_07700

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,782,147 - CA264_07675 0.82 -0.6
1,782,187 + CA264_07675 0.85 -0.3
1,782,247 - CA264_07675 0.89 +0.5
1,782,263 + -0.1
1,782,276 + +0.3
1,782,303 + -0.0
1,782,304 - +0.4
1,782,391 - -0.6
1,782,391 - -0.6
1,782,391 - -0.4
1,782,393 - +0.8
1,782,409 + +0.4
1,782,440 + -0.3
1,782,471 - +0.5
1,782,472 + +0.3
1,782,501 - +0.1
1,782,648 + CA264_07680 0.28 +0.1
1,782,648 + CA264_07680 0.28 -0.5
1,782,648 + CA264_07680 0.28 -1.1
1,782,648 + CA264_07680 0.28 -0.5
1,782,648 + CA264_07680 0.28 -2.9
1,782,649 - CA264_07680 0.28 -0.4
1,782,668 + CA264_07680 0.32 -1.4
1,782,669 - CA264_07680 0.33 -0.6
1,782,669 - CA264_07680 0.33 -0.4
1,782,669 - CA264_07680 0.33 +1.1
1,782,671 - CA264_07680 0.33 +0.3
1,782,711 - CA264_07680 0.42 +0.1
1,782,712 + CA264_07680 0.42 -0.6
1,782,713 - CA264_07680 0.42 -0.3
1,782,713 - CA264_07680 0.42 -1.0
1,782,824 + CA264_07680 0.66 -2.2
1,782,826 + CA264_07680 0.66 -2.7
1,782,853 - CA264_07680 0.72 -1.2
1,782,879 - CA264_07680 0.77 -0.5
1,782,896 - CA264_07680 0.81 -0.7
1,782,911 + CA264_07680 0.84 -1.3
1,782,912 - CA264_07680 0.84 +0.7
1,782,947 - +1.7
1,782,947 - -0.6
1,782,984 - +0.2
1,782,989 + -0.3
1,782,989 + +0.6
1,782,989 + +0.7
1,782,989 + -1.0
1,782,990 - -0.6
1,782,990 - -0.3
1,782,997 + -0.7
1,783,022 + -0.2
1,783,022 + -0.7
1,783,023 - -0.4
1,783,366 - CA264_07685 0.44 -0.8
1,783,374 + CA264_07685 0.45 -0.6
1,783,733 + CA264_07685 0.90 -0.2
1,783,734 - CA264_07685 0.90 -0.9
1,783,766 - +0.5
1,783,773 + -0.5
1,783,777 + +0.8
1,783,777 + -0.8
1,783,811 - -1.0
1,784,176 - -0.6
1,784,216 + +1.5
1,784,216 + -0.2
1,784,217 - -0.2
1,784,228 + -0.4
1,784,228 + +0.1
1,784,228 + +1.1
1,784,229 - -0.7
1,784,229 - -0.0
1,784,388 - CA264_07695 0.44 -0.7
1,784,390 - CA264_07695 0.44 -0.3
1,784,400 - CA264_07695 0.47 -0.1
1,784,400 - CA264_07695 0.47 -1.0
1,784,400 - CA264_07695 0.47 -0.2
1,784,445 + CA264_07695 0.58 -1.2
1,784,542 - CA264_07695 0.82 +0.9
1,784,549 - CA264_07695 0.83 -0.4
1,784,594 - -0.4
1,784,615 - -0.3
1,784,627 + -0.3
1,784,640 + -0.8
1,784,715 - -0.4
1,784,715 - -0.5
1,784,775 + CA264_07700 0.27 -0.1
1,784,775 + CA264_07700 0.27 +0.7
1,784,775 + CA264_07700 0.27 +0.1
1,784,775 + CA264_07700 0.27 +1.7
1,784,792 + CA264_07700 0.35 +2.5
1,784,792 + CA264_07700 0.35 -0.3
1,784,799 + CA264_07700 0.39 +0.9
1,784,799 + CA264_07700 0.39 +1.4
1,784,800 - CA264_07700 0.39 -1.5

Or see this region's nucleotide sequence