Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07585

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07580 and CA264_07585 are separated by 160 nucleotidesCA264_07585 and CA264_07590 are separated by 99 nucleotidesCA264_07590 and CA264_07595 are separated by 34 nucleotides CA264_07580: CA264_07580 - spermidine synthase, at 1,757,110 to 1,758,417 _07580 CA264_07585: CA264_07585 - hypothetical protein, at 1,758,578 to 1,759,390 _07585 CA264_07590: CA264_07590 - hypothetical protein, at 1,759,490 to 1,760,134 _07590 CA264_07595: CA264_07595 - chemotaxis protein CheA, at 1,760,169 to 1,761,809 _07595 Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1757.724 kb on + strand, within CA264_07580at 1757.807 kb on + strand, within CA264_07580at 1757.808 kb on - strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.814 kb on - strand, within CA264_07580at 1757.900 kb on + strand, within CA264_07580at 1757.918 kb on + strand, within CA264_07580at 1757.918 kb on + strand, within CA264_07580at 1758.011 kb on - strand, within CA264_07580at 1758.013 kb on - strand, within CA264_07580at 1758.018 kb on + strand, within CA264_07580at 1758.135 kb on - strand, within CA264_07580at 1758.140 kb on + strand, within CA264_07580at 1758.140 kb on + strand, within CA264_07580at 1758.141 kb on - strand, within CA264_07580at 1758.340 kb on + strandat 1758.341 kb on - strandat 1758.407 kb on - strandat 1758.426 kb on - strandat 1758.427 kb on + strandat 1758.428 kb on - strandat 1758.428 kb on - strandat 1758.474 kb on + strandat 1758.487 kb on - strandat 1758.505 kb on + strandat 1758.505 kb on + strandat 1758.544 kb on + strandat 1758.545 kb on - strandat 1758.615 kb on - strandat 1758.748 kb on + strand, within CA264_07585at 1758.756 kb on + strand, within CA264_07585at 1758.757 kb on - strand, within CA264_07585at 1758.759 kb on + strand, within CA264_07585at 1758.760 kb on - strand, within CA264_07585at 1758.852 kb on + strand, within CA264_07585at 1758.871 kb on + strand, within CA264_07585at 1758.877 kb on - strand, within CA264_07585at 1758.935 kb on + strand, within CA264_07585at 1758.955 kb on + strand, within CA264_07585at 1759.028 kb on - strand, within CA264_07585at 1759.071 kb on + strand, within CA264_07585at 1759.159 kb on + strand, within CA264_07585at 1759.160 kb on - strand, within CA264_07585at 1759.273 kb on - strand, within CA264_07585at 1759.317 kb on - strandat 1759.410 kb on + strandat 1759.410 kb on + strandat 1759.410 kb on + strandat 1759.410 kb on + strandat 1759.411 kb on - strandat 1759.411 kb on - strandat 1759.414 kb on + strandat 1759.415 kb on - strandat 1759.415 kb on - strandat 1759.415 kb on - strandat 1759.466 kb on + strandat 1759.476 kb on + strandat 1759.477 kb on - strandat 1759.477 kb on - strandat 1759.540 kb on + strandat 1759.603 kb on + strand, within CA264_07590at 1759.604 kb on - strand, within CA264_07590at 1759.628 kb on + strand, within CA264_07590at 1759.673 kb on - strand, within CA264_07590at 1759.691 kb on + strand, within CA264_07590at 1759.726 kb on - strand, within CA264_07590at 1759.726 kb on - strand, within CA264_07590at 1759.729 kb on + strand, within CA264_07590at 1759.877 kb on - strand, within CA264_07590at 1759.877 kb on - strand, within CA264_07590at 1759.877 kb on - strand, within CA264_07590at 1759.959 kb on + strand, within CA264_07590at 1759.959 kb on + strand, within CA264_07590at 1760.024 kb on + strand, within CA264_07590at 1760.085 kb on - strandat 1760.095 kb on + strandat 1760.095 kb on + strandat 1760.099 kb on - strandat 1760.203 kb on - strandat 1760.211 kb on + strandat 1760.264 kb on - strandat 1760.264 kb on - strandat 1760.267 kb on + strandat 1760.302 kb on - strandat 1760.330 kb on + strandat 1760.331 kb on - strandat 1760.334 kb on + strand, within CA264_07595at 1760.335 kb on - strand, within CA264_07595at 1760.335 kb on - strand, within CA264_07595at 1760.340 kb on + strand, within CA264_07595at 1760.378 kb on + strand, within CA264_07595at 1760.379 kb on - strand, within CA264_07595

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,757,724 + CA264_07580 0.47 -1.5
1,757,807 + CA264_07580 0.53 -0.4
1,757,808 - CA264_07580 0.53 +1.1
1,757,813 + CA264_07580 0.54 -0.8
1,757,813 + CA264_07580 0.54 -1.1
1,757,813 + CA264_07580 0.54 -1.4
1,757,813 + CA264_07580 0.54 -0.2
1,757,814 - CA264_07580 0.54 -1.7
1,757,900 + CA264_07580 0.60 -2.1
1,757,918 + CA264_07580 0.62 -0.5
1,757,918 + CA264_07580 0.62 -0.1
1,758,011 - CA264_07580 0.69 -0.8
1,758,013 - CA264_07580 0.69 -0.5
1,758,018 + CA264_07580 0.69 -0.8
1,758,135 - CA264_07580 0.78 -1.0
1,758,140 + CA264_07580 0.79 -1.1
1,758,140 + CA264_07580 0.79 -0.0
1,758,141 - CA264_07580 0.79 +0.3
1,758,340 + +1.3
1,758,341 - -1.9
1,758,407 - -0.8
1,758,426 - +0.1
1,758,427 + +0.2
1,758,428 - +0.3
1,758,428 - -1.5
1,758,474 + -1.2
1,758,487 - -0.1
1,758,505 + +0.5
1,758,505 + -0.0
1,758,544 + +0.6
1,758,545 - +0.1
1,758,615 - -1.8
1,758,748 + CA264_07585 0.21 -0.5
1,758,756 + CA264_07585 0.22 -1.0
1,758,757 - CA264_07585 0.22 +0.2
1,758,759 + CA264_07585 0.22 -2.9
1,758,760 - CA264_07585 0.22 -1.9
1,758,852 + CA264_07585 0.34 -0.1
1,758,871 + CA264_07585 0.36 +0.0
1,758,877 - CA264_07585 0.37 -0.3
1,758,935 + CA264_07585 0.44 -1.5
1,758,955 + CA264_07585 0.46 -0.6
1,759,028 - CA264_07585 0.55 +1.2
1,759,071 + CA264_07585 0.61 -0.1
1,759,159 + CA264_07585 0.71 +0.6
1,759,160 - CA264_07585 0.72 +0.7
1,759,273 - CA264_07585 0.85 -0.3
1,759,317 - +0.6
1,759,410 + -0.7
1,759,410 + +0.1
1,759,410 + -1.9
1,759,410 + -1.5
1,759,411 - -1.2
1,759,411 - +0.3
1,759,414 + +0.5
1,759,415 - +1.5
1,759,415 - +1.9
1,759,415 - -0.3
1,759,466 + +0.5
1,759,476 + +0.6
1,759,477 - -0.6
1,759,477 - -0.6
1,759,540 + -0.2
1,759,603 + CA264_07590 0.18 +0.0
1,759,604 - CA264_07590 0.18 -0.9
1,759,628 + CA264_07590 0.21 -0.5
1,759,673 - CA264_07590 0.28 +0.4
1,759,691 + CA264_07590 0.31 +0.3
1,759,726 - CA264_07590 0.37 -0.4
1,759,726 - CA264_07590 0.37 -0.8
1,759,729 + CA264_07590 0.37 +0.5
1,759,877 - CA264_07590 0.60 -0.2
1,759,877 - CA264_07590 0.60 -0.5
1,759,877 - CA264_07590 0.60 +0.0
1,759,959 + CA264_07590 0.73 -0.1
1,759,959 + CA264_07590 0.73 -0.0
1,760,024 + CA264_07590 0.83 +0.6
1,760,085 - -0.4
1,760,095 + -0.4
1,760,095 + +0.1
1,760,099 - -0.2
1,760,203 - -0.1
1,760,211 + -0.3
1,760,264 - +0.5
1,760,264 - +0.8
1,760,267 + +0.0
1,760,302 - +0.6
1,760,330 + +0.3
1,760,331 - -0.1
1,760,334 + CA264_07595 0.10 -0.7
1,760,335 - CA264_07595 0.10 -0.4
1,760,335 - CA264_07595 0.10 -0.6
1,760,340 + CA264_07595 0.10 +1.1
1,760,378 + CA264_07595 0.13 -1.0
1,760,379 - CA264_07595 0.13 -0.1

Or see this region's nucleotide sequence