Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07155

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07150 and CA264_07155 are separated by 711 nucleotidesCA264_07155 and CA264_07160 are separated by 362 nucleotides CA264_07150: CA264_07150 - elongation factor 4, at 1,648,292 to 1,650,076 _07150 CA264_07155: CA264_07155 - methylmalonyl-CoA mutase, at 1,650,788 to 1,654,174 _07155 CA264_07160: CA264_07160 - FMN-binding glutamate synthase family protein, at 1,654,537 to 1,656,093 _07160 Position (kb) 1650 1651 1652 1653 1654 1655Strain fitness (log2 ratio) -1 0 1 2 3at 1649.807 kb on - strand, within CA264_07150at 1649.915 kb on - strandat 1650.029 kb on - strandat 1650.076 kb on + strandat 1650.080 kb on + strandat 1650.080 kb on + strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.171 kb on + strandat 1650.171 kb on + strandat 1650.171 kb on + strandat 1650.171 kb on + strandat 1650.172 kb on - strandat 1650.174 kb on - strandat 1650.249 kb on + strandat 1650.249 kb on + strandat 1650.250 kb on - strandat 1650.253 kb on + strandat 1650.275 kb on + strandat 1650.275 kb on + strandat 1650.364 kb on - strandat 1650.381 kb on - strandat 1650.458 kb on + strandat 1650.459 kb on - strandat 1650.467 kb on - strandat 1650.551 kb on + strandat 1650.642 kb on - strandat 1650.649 kb on - strandat 1650.649 kb on - strandat 1650.658 kb on - strandat 1650.682 kb on + strandat 1650.688 kb on + strandat 1650.688 kb on + strandat 1650.728 kb on + strandat 1650.729 kb on - strandat 1650.729 kb on - strandat 1650.729 kb on - strandat 1650.750 kb on + strandat 1650.751 kb on - strandat 1650.751 kb on - strandat 1650.751 kb on - strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.784 kb on - strandat 1650.785 kb on + strandat 1650.785 kb on + strandat 1650.785 kb on + strandat 1650.786 kb on - strandat 1650.800 kb on - strandat 1650.805 kb on - strandat 1650.805 kb on - strandat 1650.805 kb on - strandat 1650.812 kb on + strandat 1650.812 kb on + strandat 1650.812 kb on + strandat 1650.813 kb on - strandat 1650.823 kb on - strandat 1650.829 kb on + strandat 1650.829 kb on + strandat 1650.835 kb on + strandat 1650.841 kb on + strandat 1650.895 kb on + strandat 1650.900 kb on + strandat 1650.921 kb on + strandat 1650.922 kb on - strandat 1651.037 kb on + strandat 1651.038 kb on - strandat 1651.043 kb on + strandat 1651.044 kb on - strandat 1651.044 kb on - strandat 1651.107 kb on + strandat 1651.107 kb on + strandat 1651.108 kb on - strandat 1651.108 kb on - strandat 1651.154 kb on - strand, within CA264_07155at 1651.387 kb on - strand, within CA264_07155at 1651.389 kb on + strand, within CA264_07155at 1651.390 kb on - strand, within CA264_07155at 1651.393 kb on + strand, within CA264_07155at 1651.396 kb on - strand, within CA264_07155at 1651.483 kb on + strand, within CA264_07155at 1651.510 kb on + strand, within CA264_07155at 1651.555 kb on + strand, within CA264_07155at 1651.555 kb on + strand, within CA264_07155at 1651.556 kb on - strand, within CA264_07155at 1651.574 kb on + strand, within CA264_07155at 1651.574 kb on + strand, within CA264_07155at 1651.574 kb on + strand, within CA264_07155at 1651.574 kb on + strand, within CA264_07155at 1651.575 kb on - strand, within CA264_07155at 1651.623 kb on - strand, within CA264_07155at 1651.623 kb on - strand, within CA264_07155at 1651.648 kb on - strand, within CA264_07155at 1651.740 kb on - strand, within CA264_07155at 1651.874 kb on + strand, within CA264_07155at 1651.915 kb on + strand, within CA264_07155at 1652.031 kb on + strand, within CA264_07155at 1652.186 kb on - strand, within CA264_07155at 1652.197 kb on - strand, within CA264_07155at 1652.211 kb on + strand, within CA264_07155at 1652.295 kb on + strand, within CA264_07155at 1652.319 kb on + strand, within CA264_07155at 1652.320 kb on - strand, within CA264_07155at 1652.320 kb on - strand, within CA264_07155at 1652.342 kb on + strand, within CA264_07155at 1652.343 kb on - strand, within CA264_07155at 1652.377 kb on - strand, within CA264_07155at 1652.422 kb on - strand, within CA264_07155at 1652.548 kb on + strand, within CA264_07155at 1652.632 kb on + strand, within CA264_07155at 1652.632 kb on + strand, within CA264_07155at 1652.633 kb on - strand, within CA264_07155at 1652.675 kb on + strand, within CA264_07155at 1652.676 kb on - strand, within CA264_07155at 1652.690 kb on + strand, within CA264_07155at 1652.691 kb on - strand, within CA264_07155at 1652.695 kb on + strand, within CA264_07155at 1652.751 kb on - strand, within CA264_07155at 1652.815 kb on + strand, within CA264_07155at 1652.817 kb on + strand, within CA264_07155at 1652.817 kb on + strand, within CA264_07155at 1652.921 kb on + strand, within CA264_07155at 1652.922 kb on - strand, within CA264_07155at 1653.036 kb on + strand, within CA264_07155at 1653.037 kb on - strand, within CA264_07155at 1653.039 kb on - strand, within CA264_07155at 1653.127 kb on + strand, within CA264_07155at 1653.177 kb on - strand, within CA264_07155at 1653.200 kb on - strand, within CA264_07155at 1653.274 kb on + strand, within CA264_07155at 1653.300 kb on + strand, within CA264_07155at 1653.300 kb on + strand, within CA264_07155at 1653.300 kb on + strand, within CA264_07155at 1653.308 kb on + strand, within CA264_07155at 1653.308 kb on + strand, within CA264_07155at 1653.309 kb on - strand, within CA264_07155at 1653.309 kb on - strand, within CA264_07155at 1653.443 kb on + strand, within CA264_07155at 1653.444 kb on - strand, within CA264_07155at 1653.477 kb on - strand, within CA264_07155at 1653.526 kb on + strand, within CA264_07155at 1653.566 kb on + strand, within CA264_07155at 1653.567 kb on - strand, within CA264_07155at 1653.819 kb on - strand, within CA264_07155at 1653.933 kb on + strandat 1653.949 kb on - strandat 1654.173 kb on - strandat 1654.195 kb on + strandat 1654.195 kb on + strandat 1654.196 kb on - strandat 1654.246 kb on + strandat 1654.263 kb on - strandat 1654.265 kb on - strandat 1654.286 kb on + strandat 1654.286 kb on + strandat 1654.290 kb on + strandat 1654.291 kb on - strandat 1654.297 kb on + strandat 1654.304 kb on + strandat 1654.310 kb on - strandat 1654.311 kb on + strandat 1654.311 kb on + strandat 1654.312 kb on - strandat 1654.319 kb on - strandat 1654.357 kb on - strandat 1654.384 kb on - strandat 1654.439 kb on + strandat 1654.440 kb on - strandat 1654.531 kb on - strandat 1654.539 kb on - strandat 1654.542 kb on + strandat 1654.548 kb on + strandat 1654.550 kb on + strandat 1654.550 kb on + strandat 1654.551 kb on - strandat 1654.551 kb on - strandat 1654.551 kb on - strandat 1654.551 kb on - strandat 1654.562 kb on - strandat 1654.593 kb on - strandat 1654.837 kb on - strand, within CA264_07160at 1654.872 kb on - strand, within CA264_07160at 1654.921 kb on + strand, within CA264_07160at 1654.936 kb on + strand, within CA264_07160at 1654.967 kb on + strand, within CA264_07160at 1654.968 kb on - strand, within CA264_07160at 1655.007 kb on - strand, within CA264_07160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,649,807 - CA264_07150 0.85 -1.7
1,649,915 - -0.6
1,650,029 - -1.7
1,650,076 + +0.4
1,650,080 + +0.8
1,650,080 + -0.7
1,650,081 - -1.2
1,650,081 - -0.6
1,650,081 - +0.1
1,650,081 - -0.1
1,650,081 - +0.6
1,650,081 - -0.5
1,650,081 - -0.5
1,650,171 + -0.8
1,650,171 + -0.9
1,650,171 + +0.4
1,650,171 + +0.6
1,650,172 - +0.4
1,650,174 - -0.3
1,650,249 + +0.5
1,650,249 + +0.2
1,650,250 - +0.2
1,650,253 + +0.9
1,650,275 + +1.4
1,650,275 + +0.4
1,650,364 - -0.2
1,650,381 - -0.0
1,650,458 + -0.6
1,650,459 - +0.1
1,650,467 - +0.7
1,650,551 + -0.6
1,650,642 - -0.6
1,650,649 - -1.3
1,650,649 - +0.1
1,650,658 - -0.3
1,650,682 + +0.1
1,650,688 + +0.0
1,650,688 + -0.3
1,650,728 + +0.4
1,650,729 - -0.0
1,650,729 - +0.1
1,650,729 - +0.3
1,650,750 + +1.8
1,650,751 - +0.3
1,650,751 - -0.6
1,650,751 - +0.4
1,650,783 + +0.2
1,650,783 + -0.7
1,650,783 + -1.7
1,650,783 + -0.2
1,650,783 + -0.2
1,650,784 - +2.0
1,650,785 + -0.1
1,650,785 + -0.2
1,650,785 + +0.2
1,650,786 - +0.7
1,650,800 - -0.4
1,650,805 - -0.5
1,650,805 - +0.0
1,650,805 - -0.2
1,650,812 + +1.0
1,650,812 + +0.5
1,650,812 + +0.3
1,650,813 - +0.3
1,650,823 - -0.2
1,650,829 + +0.2
1,650,829 + +1.0
1,650,835 + +0.3
1,650,841 + -1.1
1,650,895 + +0.4
1,650,900 + +0.8
1,650,921 + -0.2
1,650,922 - -0.9
1,651,037 + -0.3
1,651,038 - -0.5
1,651,043 + +0.8
1,651,044 - +0.1
1,651,044 - -0.0
1,651,107 + -0.4
1,651,107 + -0.0
1,651,108 - -0.7
1,651,108 - +0.1
1,651,154 - CA264_07155 0.11 +0.3
1,651,387 - CA264_07155 0.18 +0.9
1,651,389 + CA264_07155 0.18 +2.2
1,651,390 - CA264_07155 0.18 -0.6
1,651,393 + CA264_07155 0.18 -0.1
1,651,396 - CA264_07155 0.18 -0.0
1,651,483 + CA264_07155 0.21 -0.4
1,651,510 + CA264_07155 0.21 +0.0
1,651,555 + CA264_07155 0.23 +0.3
1,651,555 + CA264_07155 0.23 -0.0
1,651,556 - CA264_07155 0.23 -0.9
1,651,574 + CA264_07155 0.23 -0.0
1,651,574 + CA264_07155 0.23 +0.5
1,651,574 + CA264_07155 0.23 +0.5
1,651,574 + CA264_07155 0.23 +0.3
1,651,575 - CA264_07155 0.23 +0.2
1,651,623 - CA264_07155 0.25 +0.5
1,651,623 - CA264_07155 0.25 +1.4
1,651,648 - CA264_07155 0.25 +0.4
1,651,740 - CA264_07155 0.28 -0.4
1,651,874 + CA264_07155 0.32 +0.2
1,651,915 + CA264_07155 0.33 +0.2
1,652,031 + CA264_07155 0.37 +0.8
1,652,186 - CA264_07155 0.41 -0.2
1,652,197 - CA264_07155 0.42 -0.9
1,652,211 + CA264_07155 0.42 +0.8
1,652,295 + CA264_07155 0.44 +0.7
1,652,319 + CA264_07155 0.45 +0.2
1,652,320 - CA264_07155 0.45 +0.9
1,652,320 - CA264_07155 0.45 +0.3
1,652,342 + CA264_07155 0.46 -0.1
1,652,343 - CA264_07155 0.46 +0.6
1,652,377 - CA264_07155 0.47 +0.9
1,652,422 - CA264_07155 0.48 +0.5
1,652,548 + CA264_07155 0.52 -0.2
1,652,632 + CA264_07155 0.54 -0.2
1,652,632 + CA264_07155 0.54 +0.4
1,652,633 - CA264_07155 0.54 +1.8
1,652,675 + CA264_07155 0.56 +0.6
1,652,676 - CA264_07155 0.56 +0.1
1,652,690 + CA264_07155 0.56 -0.1
1,652,691 - CA264_07155 0.56 -0.4
1,652,695 + CA264_07155 0.56 +0.1
1,652,751 - CA264_07155 0.58 +0.8
1,652,815 + CA264_07155 0.60 +0.3
1,652,817 + CA264_07155 0.60 +0.4
1,652,817 + CA264_07155 0.60 +0.1
1,652,921 + CA264_07155 0.63 +0.5
1,652,922 - CA264_07155 0.63 +0.3
1,653,036 + CA264_07155 0.66 +0.1
1,653,037 - CA264_07155 0.66 -0.5
1,653,039 - CA264_07155 0.66 -0.3
1,653,127 + CA264_07155 0.69 +1.5
1,653,177 - CA264_07155 0.71 +0.9
1,653,200 - CA264_07155 0.71 +1.4
1,653,274 + CA264_07155 0.73 +0.2
1,653,300 + CA264_07155 0.74 -0.6
1,653,300 + CA264_07155 0.74 +0.1
1,653,300 + CA264_07155 0.74 +0.5
1,653,308 + CA264_07155 0.74 +1.7
1,653,308 + CA264_07155 0.74 -0.5
1,653,309 - CA264_07155 0.74 +0.2
1,653,309 - CA264_07155 0.74 -0.0
1,653,443 + CA264_07155 0.78 -0.3
1,653,444 - CA264_07155 0.78 +0.8
1,653,477 - CA264_07155 0.79 +0.9
1,653,526 + CA264_07155 0.81 -1.0
1,653,566 + CA264_07155 0.82 +0.2
1,653,567 - CA264_07155 0.82 -0.4
1,653,819 - CA264_07155 0.89 +0.1
1,653,933 + +0.3
1,653,949 - +0.3
1,654,173 - -0.7
1,654,195 + -1.6
1,654,195 + -0.4
1,654,196 - +0.4
1,654,246 + -0.9
1,654,263 - -0.7
1,654,265 - -0.4
1,654,286 + -0.1
1,654,286 + +0.6
1,654,290 + +0.3
1,654,291 - +0.6
1,654,297 + -1.2
1,654,304 + -1.0
1,654,310 - -0.5
1,654,311 + -0.9
1,654,311 + -0.4
1,654,312 - +0.7
1,654,319 - +0.2
1,654,357 - -0.4
1,654,384 - -0.4
1,654,439 + -0.4
1,654,440 - +0.4
1,654,531 - -0.5
1,654,539 - -0.7
1,654,542 + -1.2
1,654,548 + -1.7
1,654,550 + -0.6
1,654,550 + +0.2
1,654,551 - -1.7
1,654,551 - -0.6
1,654,551 - -0.8
1,654,551 - -0.1
1,654,562 - -0.3
1,654,593 - -0.0
1,654,837 - CA264_07160 0.19 +0.7
1,654,872 - CA264_07160 0.22 +2.8
1,654,921 + CA264_07160 0.25 -0.2
1,654,936 + CA264_07160 0.26 -0.4
1,654,967 + CA264_07160 0.28 -0.6
1,654,968 - CA264_07160 0.28 -0.1
1,655,007 - CA264_07160 0.30 -0.3

Or see this region's nucleotide sequence