Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06940

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06935 and CA264_06940 are separated by 273 nucleotidesCA264_06940 and CA264_06945 are separated by 481 nucleotides CA264_06935: CA264_06935 - dihydroxy-acid dehydratase, at 1,602,867 to 1,604,585 _06935 CA264_06940: CA264_06940 - branched-chain amino acid aminotransferase, at 1,604,859 to 1,605,743 _06940 CA264_06945: CA264_06945 - short-chain dehydrogenase, at 1,606,225 to 1,607,013 _06945 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1603.949 kb on + strand, within CA264_06935at 1603.990 kb on + strand, within CA264_06935at 1603.994 kb on + strand, within CA264_06935at 1603.995 kb on - strand, within CA264_06935at 1604.045 kb on - strand, within CA264_06935at 1604.060 kb on + strand, within CA264_06935at 1604.153 kb on - strand, within CA264_06935at 1604.153 kb on - strand, within CA264_06935at 1604.245 kb on + strand, within CA264_06935at 1604.245 kb on + strand, within CA264_06935at 1604.246 kb on - strand, within CA264_06935at 1604.249 kb on + strand, within CA264_06935at 1604.250 kb on - strand, within CA264_06935at 1604.287 kb on - strand, within CA264_06935at 1604.308 kb on + strand, within CA264_06935at 1604.373 kb on + strand, within CA264_06935at 1604.374 kb on - strand, within CA264_06935at 1604.403 kb on + strand, within CA264_06935at 1604.473 kb on - strandat 1604.556 kb on - strandat 1604.558 kb on - strandat 1604.588 kb on + strandat 1604.589 kb on - strandat 1604.589 kb on - strandat 1604.589 kb on - strandat 1604.602 kb on + strandat 1604.715 kb on + strandat 1604.716 kb on - strandat 1604.754 kb on + strandat 1604.754 kb on + strandat 1604.936 kb on - strandat 1604.936 kb on - strandat 1604.950 kb on - strand, within CA264_06940at 1604.953 kb on + strand, within CA264_06940at 1604.954 kb on - strand, within CA264_06940at 1604.970 kb on + strand, within CA264_06940at 1605.060 kb on - strand, within CA264_06940at 1605.168 kb on - strand, within CA264_06940at 1605.263 kb on + strand, within CA264_06940at 1605.263 kb on + strand, within CA264_06940at 1605.269 kb on - strand, within CA264_06940at 1605.269 kb on - strand, within CA264_06940at 1605.322 kb on + strand, within CA264_06940at 1605.330 kb on + strand, within CA264_06940at 1605.331 kb on - strand, within CA264_06940at 1605.439 kb on + strandat 1605.457 kb on + strand, within CA264_06940at 1605.571 kb on + strand, within CA264_06940at 1605.591 kb on + strand, within CA264_06940at 1605.591 kb on + strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.649 kb on + strand, within CA264_06940at 1605.667 kb on + strandat 1605.734 kb on + strandat 1605.739 kb on + strandat 1605.746 kb on + strandat 1605.746 kb on + strandat 1605.747 kb on - strandat 1605.764 kb on - strandat 1605.764 kb on - strandat 1605.767 kb on + strandat 1605.767 kb on + strandat 1605.768 kb on - strandat 1605.769 kb on + strandat 1605.769 kb on + strandat 1605.769 kb on + strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.773 kb on + strandat 1605.828 kb on + strandat 1605.828 kb on + strandat 1605.829 kb on - strandat 1605.864 kb on - strandat 1605.895 kb on + strandat 1605.896 kb on - strandat 1605.906 kb on + strandat 1605.907 kb on - strandat 1606.058 kb on + strandat 1606.058 kb on + strandat 1606.059 kb on - strandat 1606.059 kb on - strandat 1606.059 kb on - strandat 1606.061 kb on + strandat 1606.062 kb on - strandat 1606.062 kb on - strandat 1606.121 kb on + strandat 1606.121 kb on + strandat 1606.122 kb on - strandat 1606.122 kb on - strandat 1606.127 kb on + strandat 1606.211 kb on - strandat 1606.233 kb on - strandat 1606.314 kb on - strand, within CA264_06945at 1606.322 kb on + strand, within CA264_06945at 1606.540 kb on - strand, within CA264_06945at 1606.540 kb on - strand, within CA264_06945at 1606.605 kb on - strand, within CA264_06945at 1606.654 kb on + strand, within CA264_06945at 1606.654 kb on + strand, within CA264_06945at 1606.681 kb on + strand, within CA264_06945

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,603,949 + CA264_06935 0.63 -0.1
1,603,990 + CA264_06935 0.65 -1.3
1,603,994 + CA264_06935 0.66 +0.1
1,603,995 - CA264_06935 0.66 -0.2
1,604,045 - CA264_06935 0.69 +0.4
1,604,060 + CA264_06935 0.69 -1.5
1,604,153 - CA264_06935 0.75 +0.4
1,604,153 - CA264_06935 0.75 -0.5
1,604,245 + CA264_06935 0.80 -0.0
1,604,245 + CA264_06935 0.80 -0.9
1,604,246 - CA264_06935 0.80 -0.5
1,604,249 + CA264_06935 0.80 -0.4
1,604,250 - CA264_06935 0.80 -1.2
1,604,287 - CA264_06935 0.83 -0.8
1,604,308 + CA264_06935 0.84 -0.4
1,604,373 + CA264_06935 0.88 +0.6
1,604,374 - CA264_06935 0.88 -0.2
1,604,403 + CA264_06935 0.89 +1.7
1,604,473 - -0.0
1,604,556 - -0.3
1,604,558 - -0.2
1,604,588 + +0.1
1,604,589 - -0.3
1,604,589 - -0.4
1,604,589 - +1.7
1,604,602 + +0.5
1,604,715 + +0.2
1,604,716 - -0.2
1,604,754 + -0.4
1,604,754 + +0.4
1,604,936 - +0.2
1,604,936 - +0.3
1,604,950 - CA264_06940 0.10 -1.1
1,604,953 + CA264_06940 0.11 -0.5
1,604,954 - CA264_06940 0.11 +0.3
1,604,970 + CA264_06940 0.13 -0.1
1,605,060 - CA264_06940 0.23 +0.5
1,605,168 - CA264_06940 0.35 -0.7
1,605,263 + CA264_06940 0.46 -0.4
1,605,263 + CA264_06940 0.46 -0.4
1,605,269 - CA264_06940 0.46 +0.2
1,605,269 - CA264_06940 0.46 -0.4
1,605,322 + CA264_06940 0.52 -2.3
1,605,330 + CA264_06940 0.53 +0.6
1,605,331 - CA264_06940 0.53 -0.3
1,605,439 + +1.4
1,605,457 + CA264_06940 0.68 -0.2
1,605,571 + CA264_06940 0.80 -2.5
1,605,591 + CA264_06940 0.83 +1.4
1,605,591 + CA264_06940 0.83 -1.3
1,605,592 - CA264_06940 0.83 +1.0
1,605,592 - CA264_06940 0.83 -1.2
1,605,592 - CA264_06940 0.83 +0.0
1,605,592 - CA264_06940 0.83 -1.0
1,605,649 + CA264_06940 0.89 +0.4
1,605,667 + -0.2
1,605,734 + -0.4
1,605,739 + -0.4
1,605,746 + +0.9
1,605,746 + -0.4
1,605,747 - -1.0
1,605,764 - +0.1
1,605,764 - -2.9
1,605,767 + -0.8
1,605,767 + +0.2
1,605,768 - -0.3
1,605,769 + -1.7
1,605,769 + -0.4
1,605,769 + +1.8
1,605,770 - -0.0
1,605,770 - +0.9
1,605,770 - +0.9
1,605,770 - +0.1
1,605,770 - +2.0
1,605,773 + +0.8
1,605,828 + -0.5
1,605,828 + +1.1
1,605,829 - +0.5
1,605,864 - -0.9
1,605,895 + -1.0
1,605,896 - -0.8
1,605,906 + -0.4
1,605,907 - -0.5
1,606,058 + +0.0
1,606,058 + -1.4
1,606,059 - +0.7
1,606,059 - +0.3
1,606,059 - -0.0
1,606,061 + +1.9
1,606,062 - +0.4
1,606,062 - -0.9
1,606,121 + +1.4
1,606,121 + -0.4
1,606,122 - +0.3
1,606,122 - +0.5
1,606,127 + -1.6
1,606,211 - -0.7
1,606,233 - +0.8
1,606,314 - CA264_06945 0.11 +0.2
1,606,322 + CA264_06945 0.12 +0.3
1,606,540 - CA264_06945 0.40 -0.4
1,606,540 - CA264_06945 0.40 +0.8
1,606,605 - CA264_06945 0.48 -0.0
1,606,654 + CA264_06945 0.54 +0.3
1,606,654 + CA264_06945 0.54 +0.4
1,606,681 + CA264_06945 0.58 -0.9

Or see this region's nucleotide sequence