Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06935

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06930 and CA264_06935 overlap by 38 nucleotidesCA264_06935 and CA264_06940 are separated by 273 nucleotides CA264_06930: CA264_06930 - acetolactate synthase, large subunit, biosynthetic type, at 1,601,171 to 1,602,904 _06930 CA264_06935: CA264_06935 - dihydroxy-acid dehydratase, at 1,602,867 to 1,604,585 _06935 CA264_06940: CA264_06940 - branched-chain amino acid aminotransferase, at 1,604,859 to 1,605,743 _06940 Position (kb) 1602 1603 1604 1605Strain fitness (log2 ratio) -2 -1 0 1 2at 1601.949 kb on - strand, within CA264_06930at 1601.949 kb on - strand, within CA264_06930at 1601.982 kb on + strand, within CA264_06930at 1602.034 kb on + strand, within CA264_06930at 1602.072 kb on + strand, within CA264_06930at 1602.232 kb on + strand, within CA264_06930at 1602.232 kb on + strand, within CA264_06930at 1602.233 kb on - strand, within CA264_06930at 1602.233 kb on - strand, within CA264_06930at 1602.233 kb on - strand, within CA264_06930at 1602.279 kb on + strand, within CA264_06930at 1602.420 kb on + strand, within CA264_06930at 1602.420 kb on + strand, within CA264_06930at 1602.421 kb on - strand, within CA264_06930at 1602.549 kb on + strand, within CA264_06930at 1602.550 kb on - strand, within CA264_06930at 1602.550 kb on - strand, within CA264_06930at 1602.656 kb on + strand, within CA264_06930at 1602.656 kb on + strand, within CA264_06930at 1602.679 kb on - strand, within CA264_06930at 1602.742 kb on + strandat 1602.743 kb on - strandat 1602.752 kb on + strandat 1602.753 kb on - strandat 1602.762 kb on + strandat 1602.762 kb on + strandat 1602.762 kb on + strandat 1602.762 kb on + strandat 1602.763 kb on - strandat 1602.763 kb on - strandat 1602.763 kb on - strandat 1602.776 kb on - strandat 1602.899 kb on + strandat 1602.926 kb on + strandat 1602.969 kb on + strandat 1603.123 kb on + strand, within CA264_06935at 1603.124 kb on - strand, within CA264_06935at 1603.124 kb on - strand, within CA264_06935at 1603.236 kb on - strand, within CA264_06935at 1603.278 kb on + strand, within CA264_06935at 1603.279 kb on - strand, within CA264_06935at 1603.311 kb on + strand, within CA264_06935at 1603.326 kb on - strand, within CA264_06935at 1603.338 kb on - strand, within CA264_06935at 1603.364 kb on + strand, within CA264_06935at 1603.364 kb on + strand, within CA264_06935at 1603.365 kb on - strand, within CA264_06935at 1603.441 kb on - strand, within CA264_06935at 1603.649 kb on - strand, within CA264_06935at 1603.725 kb on + strand, within CA264_06935at 1603.949 kb on + strand, within CA264_06935at 1603.990 kb on + strand, within CA264_06935at 1603.994 kb on + strand, within CA264_06935at 1603.995 kb on - strand, within CA264_06935at 1604.045 kb on - strand, within CA264_06935at 1604.060 kb on + strand, within CA264_06935at 1604.153 kb on - strand, within CA264_06935at 1604.153 kb on - strand, within CA264_06935at 1604.245 kb on + strand, within CA264_06935at 1604.245 kb on + strand, within CA264_06935at 1604.246 kb on - strand, within CA264_06935at 1604.249 kb on + strand, within CA264_06935at 1604.250 kb on - strand, within CA264_06935at 1604.287 kb on - strand, within CA264_06935at 1604.308 kb on + strand, within CA264_06935at 1604.373 kb on + strand, within CA264_06935at 1604.374 kb on - strand, within CA264_06935at 1604.403 kb on + strand, within CA264_06935at 1604.473 kb on - strandat 1604.556 kb on - strandat 1604.558 kb on - strandat 1604.588 kb on + strandat 1604.589 kb on - strandat 1604.589 kb on - strandat 1604.589 kb on - strandat 1604.602 kb on + strandat 1604.715 kb on + strandat 1604.716 kb on - strandat 1604.754 kb on + strandat 1604.754 kb on + strandat 1604.936 kb on - strandat 1604.936 kb on - strandat 1604.950 kb on - strand, within CA264_06940at 1604.953 kb on + strand, within CA264_06940at 1604.954 kb on - strand, within CA264_06940at 1604.970 kb on + strand, within CA264_06940at 1605.060 kb on - strand, within CA264_06940at 1605.168 kb on - strand, within CA264_06940at 1605.263 kb on + strand, within CA264_06940at 1605.263 kb on + strand, within CA264_06940at 1605.269 kb on - strand, within CA264_06940at 1605.269 kb on - strand, within CA264_06940at 1605.322 kb on + strand, within CA264_06940at 1605.330 kb on + strand, within CA264_06940at 1605.331 kb on - strand, within CA264_06940at 1605.439 kb on + strandat 1605.457 kb on + strand, within CA264_06940at 1605.571 kb on + strand, within CA264_06940

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,601,949 - CA264_06930 0.45 -0.6
1,601,949 - CA264_06930 0.45 +0.1
1,601,982 + CA264_06930 0.47 -0.3
1,602,034 + CA264_06930 0.50 -0.1
1,602,072 + CA264_06930 0.52 +0.4
1,602,232 + CA264_06930 0.61 +0.4
1,602,232 + CA264_06930 0.61 -1.1
1,602,233 - CA264_06930 0.61 +0.8
1,602,233 - CA264_06930 0.61 -1.9
1,602,233 - CA264_06930 0.61 +0.1
1,602,279 + CA264_06930 0.64 +0.4
1,602,420 + CA264_06930 0.72 -0.6
1,602,420 + CA264_06930 0.72 +0.8
1,602,421 - CA264_06930 0.72 +0.1
1,602,549 + CA264_06930 0.79 -0.8
1,602,550 - CA264_06930 0.80 +2.4
1,602,550 - CA264_06930 0.80 -0.4
1,602,656 + CA264_06930 0.86 -0.7
1,602,656 + CA264_06930 0.86 -0.3
1,602,679 - CA264_06930 0.87 -0.4
1,602,742 + -0.4
1,602,743 - -1.6
1,602,752 + -0.1
1,602,753 - -1.2
1,602,762 + -0.8
1,602,762 + -0.8
1,602,762 + -0.3
1,602,762 + -0.3
1,602,763 - -0.9
1,602,763 - -2.2
1,602,763 - -0.6
1,602,776 - +0.2
1,602,899 + +1.1
1,602,926 + -0.4
1,602,969 + +0.6
1,603,123 + CA264_06935 0.15 -0.3
1,603,124 - CA264_06935 0.15 +0.6
1,603,124 - CA264_06935 0.15 -0.3
1,603,236 - CA264_06935 0.21 -0.6
1,603,278 + CA264_06935 0.24 +0.2
1,603,279 - CA264_06935 0.24 -0.3
1,603,311 + CA264_06935 0.26 +0.6
1,603,326 - CA264_06935 0.27 -1.5
1,603,338 - CA264_06935 0.27 -0.2
1,603,364 + CA264_06935 0.29 -1.8
1,603,364 + CA264_06935 0.29 -1.0
1,603,365 - CA264_06935 0.29 -0.7
1,603,441 - CA264_06935 0.33 -1.0
1,603,649 - CA264_06935 0.45 +0.1
1,603,725 + CA264_06935 0.50 -1.4
1,603,949 + CA264_06935 0.63 -0.1
1,603,990 + CA264_06935 0.65 -1.3
1,603,994 + CA264_06935 0.66 +0.1
1,603,995 - CA264_06935 0.66 -0.2
1,604,045 - CA264_06935 0.69 +0.4
1,604,060 + CA264_06935 0.69 -1.5
1,604,153 - CA264_06935 0.75 +0.4
1,604,153 - CA264_06935 0.75 -0.5
1,604,245 + CA264_06935 0.80 -0.0
1,604,245 + CA264_06935 0.80 -0.9
1,604,246 - CA264_06935 0.80 -0.5
1,604,249 + CA264_06935 0.80 -0.4
1,604,250 - CA264_06935 0.80 -1.2
1,604,287 - CA264_06935 0.83 -0.8
1,604,308 + CA264_06935 0.84 -0.4
1,604,373 + CA264_06935 0.88 +0.6
1,604,374 - CA264_06935 0.88 -0.2
1,604,403 + CA264_06935 0.89 +1.7
1,604,473 - -0.0
1,604,556 - -0.3
1,604,558 - -0.2
1,604,588 + +0.1
1,604,589 - -0.3
1,604,589 - -0.4
1,604,589 - +1.7
1,604,602 + +0.5
1,604,715 + +0.2
1,604,716 - -0.2
1,604,754 + -0.4
1,604,754 + +0.4
1,604,936 - +0.2
1,604,936 - +0.3
1,604,950 - CA264_06940 0.10 -1.1
1,604,953 + CA264_06940 0.11 -0.5
1,604,954 - CA264_06940 0.11 +0.3
1,604,970 + CA264_06940 0.13 -0.1
1,605,060 - CA264_06940 0.23 +0.5
1,605,168 - CA264_06940 0.35 -0.7
1,605,263 + CA264_06940 0.46 -0.4
1,605,263 + CA264_06940 0.46 -0.4
1,605,269 - CA264_06940 0.46 +0.2
1,605,269 - CA264_06940 0.46 -0.4
1,605,322 + CA264_06940 0.52 -2.3
1,605,330 + CA264_06940 0.53 +0.6
1,605,331 - CA264_06940 0.53 -0.3
1,605,439 + +1.4
1,605,457 + CA264_06940 0.68 -0.2
1,605,571 + CA264_06940 0.80 -2.5

Or see this region's nucleotide sequence