Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06925

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06920 and CA264_06925 are separated by 130 nucleotidesCA264_06925 and CA264_06930 are separated by 23 nucleotides CA264_06920: CA264_06920 - ketol-acid reductoisomerase, at 1,599,362 to 1,600,408 _06920 CA264_06925: CA264_06925 - acetolactate synthase small subunit, at 1,600,539 to 1,601,147 _06925 CA264_06930: CA264_06930 - acetolactate synthase, large subunit, biosynthetic type, at 1,601,171 to 1,602,904 _06930 Position (kb) 1600 1601 1602Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1599.726 kb on + strand, within CA264_06920at 1599.727 kb on - strand, within CA264_06920at 1599.727 kb on - strand, within CA264_06920at 1599.737 kb on + strand, within CA264_06920at 1599.738 kb on - strand, within CA264_06920at 1599.893 kb on + strand, within CA264_06920at 1599.894 kb on - strand, within CA264_06920at 1599.894 kb on - strand, within CA264_06920at 1600.019 kb on - strand, within CA264_06920at 1600.047 kb on + strand, within CA264_06920at 1600.097 kb on + strand, within CA264_06920at 1600.119 kb on - strand, within CA264_06920at 1600.157 kb on + strand, within CA264_06920at 1600.181 kb on + strand, within CA264_06920at 1600.198 kb on + strand, within CA264_06920at 1600.199 kb on - strand, within CA264_06920at 1600.238 kb on + strand, within CA264_06920at 1600.238 kb on + strand, within CA264_06920at 1600.382 kb on + strandat 1600.423 kb on + strandat 1600.430 kb on - strandat 1600.430 kb on - strandat 1600.492 kb on + strandat 1600.493 kb on - strandat 1600.574 kb on - strandat 1600.762 kb on + strand, within CA264_06925at 1600.762 kb on + strand, within CA264_06925at 1600.763 kb on - strand, within CA264_06925at 1600.895 kb on + strand, within CA264_06925at 1600.900 kb on + strand, within CA264_06925at 1600.903 kb on - strand, within CA264_06925at 1600.929 kb on + strand, within CA264_06925at 1601.099 kb on - strandat 1601.147 kb on + strandat 1601.147 kb on + strandat 1601.148 kb on - strandat 1601.148 kb on - strandat 1601.148 kb on - strandat 1601.148 kb on - strandat 1601.151 kb on + strandat 1601.151 kb on + strandat 1601.151 kb on + strandat 1601.151 kb on + strandat 1601.151 kb on + strandat 1601.152 kb on - strandat 1601.152 kb on - strandat 1601.161 kb on + strandat 1601.172 kb on + strandat 1601.192 kb on + strandat 1601.193 kb on - strandat 1601.193 kb on - strandat 1601.259 kb on + strandat 1601.259 kb on + strandat 1601.301 kb on - strandat 1601.357 kb on + strand, within CA264_06930at 1601.357 kb on + strand, within CA264_06930at 1601.358 kb on - strand, within CA264_06930at 1601.466 kb on - strand, within CA264_06930at 1601.485 kb on + strand, within CA264_06930at 1601.486 kb on - strand, within CA264_06930at 1601.488 kb on + strand, within CA264_06930at 1601.488 kb on + strand, within CA264_06930at 1601.489 kb on - strand, within CA264_06930at 1601.489 kb on - strand, within CA264_06930at 1601.489 kb on - strand, within CA264_06930at 1601.489 kb on - strand, within CA264_06930at 1601.489 kb on - strand, within CA264_06930at 1601.565 kb on + strand, within CA264_06930at 1601.570 kb on - strand, within CA264_06930at 1601.570 kb on - strand, within CA264_06930at 1601.814 kb on + strand, within CA264_06930at 1601.831 kb on + strand, within CA264_06930at 1601.842 kb on + strand, within CA264_06930at 1601.843 kb on - strand, within CA264_06930at 1601.949 kb on - strand, within CA264_06930at 1601.949 kb on - strand, within CA264_06930at 1601.982 kb on + strand, within CA264_06930at 1602.034 kb on + strand, within CA264_06930at 1602.072 kb on + strand, within CA264_06930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,599,726 + CA264_06920 0.35 +0.4
1,599,727 - CA264_06920 0.35 -0.4
1,599,727 - CA264_06920 0.35 +0.3
1,599,737 + CA264_06920 0.36 +0.7
1,599,738 - CA264_06920 0.36 +0.3
1,599,893 + CA264_06920 0.51 -0.3
1,599,894 - CA264_06920 0.51 -0.6
1,599,894 - CA264_06920 0.51 -0.7
1,600,019 - CA264_06920 0.63 -1.2
1,600,047 + CA264_06920 0.65 -0.2
1,600,097 + CA264_06920 0.70 +2.6
1,600,119 - CA264_06920 0.72 -0.4
1,600,157 + CA264_06920 0.76 -0.1
1,600,181 + CA264_06920 0.78 -0.3
1,600,198 + CA264_06920 0.80 +0.0
1,600,199 - CA264_06920 0.80 -1.9
1,600,238 + CA264_06920 0.84 -0.7
1,600,238 + CA264_06920 0.84 -0.2
1,600,382 + -1.4
1,600,423 + -0.4
1,600,430 - -0.9
1,600,430 - -0.3
1,600,492 + +0.1
1,600,493 - -0.8
1,600,574 - +0.6
1,600,762 + CA264_06925 0.37 +1.2
1,600,762 + CA264_06925 0.37 +0.4
1,600,763 - CA264_06925 0.37 +0.8
1,600,895 + CA264_06925 0.58 +1.2
1,600,900 + CA264_06925 0.59 +2.4
1,600,903 - CA264_06925 0.60 -1.2
1,600,929 + CA264_06925 0.64 +0.0
1,601,099 - +0.1
1,601,147 + -0.0
1,601,147 + -0.3
1,601,148 - +0.3
1,601,148 - -0.1
1,601,148 - -0.2
1,601,148 - -0.5
1,601,151 + +0.3
1,601,151 + -0.3
1,601,151 + -0.5
1,601,151 + +0.9
1,601,151 + -0.2
1,601,152 - +0.2
1,601,152 - -0.6
1,601,161 + -0.2
1,601,172 + -1.2
1,601,192 + -0.2
1,601,193 - -0.8
1,601,193 - -0.1
1,601,259 + +0.1
1,601,259 + -0.1
1,601,301 - -1.8
1,601,357 + CA264_06930 0.11 -0.2
1,601,357 + CA264_06930 0.11 -0.0
1,601,358 - CA264_06930 0.11 -0.5
1,601,466 - CA264_06930 0.17 -0.3
1,601,485 + CA264_06930 0.18 -0.0
1,601,486 - CA264_06930 0.18 -0.5
1,601,488 + CA264_06930 0.18 -0.3
1,601,488 + CA264_06930 0.18 -0.8
1,601,489 - CA264_06930 0.18 +0.8
1,601,489 - CA264_06930 0.18 -0.2
1,601,489 - CA264_06930 0.18 -0.2
1,601,489 - CA264_06930 0.18 +0.7
1,601,489 - CA264_06930 0.18 -1.0
1,601,565 + CA264_06930 0.23 -3.2
1,601,570 - CA264_06930 0.23 -0.1
1,601,570 - CA264_06930 0.23 -0.7
1,601,814 + CA264_06930 0.37 -0.2
1,601,831 + CA264_06930 0.38 -1.1
1,601,842 + CA264_06930 0.39 -2.5
1,601,843 - CA264_06930 0.39 -0.6
1,601,949 - CA264_06930 0.45 -0.6
1,601,949 - CA264_06930 0.45 +0.1
1,601,982 + CA264_06930 0.47 -0.3
1,602,034 + CA264_06930 0.50 -0.1
1,602,072 + CA264_06930 0.52 +0.4

Or see this region's nucleotide sequence