Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05150

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05145 and CA264_05150 are separated by 210 nucleotidesCA264_05150 and CA264_05155 are separated by 463 nucleotides CA264_05145: CA264_05145 - hybrid sensor histidine kinase/response regulator, at 1,190,382 to 1,195,025 _05145 CA264_05150: CA264_05150 - response regulator, at 1,195,236 to 1,196,594 _05150 CA264_05155: CA264_05155 - hypothetical protein, at 1,197,058 to 1,197,909 _05155 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1194.259 kb on + strand, within CA264_05145at 1194.266 kb on + strand, within CA264_05145at 1194.303 kb on - strand, within CA264_05145at 1194.303 kb on - strand, within CA264_05145at 1194.303 kb on - strand, within CA264_05145at 1194.305 kb on - strand, within CA264_05145at 1194.308 kb on - strand, within CA264_05145at 1194.326 kb on - strand, within CA264_05145at 1194.361 kb on - strand, within CA264_05145at 1194.382 kb on - strand, within CA264_05145at 1194.498 kb on - strand, within CA264_05145at 1194.558 kb on - strand, within CA264_05145at 1194.558 kb on - strand, within CA264_05145at 1194.633 kb on + strandat 1194.754 kb on + strandat 1194.754 kb on + strandat 1194.754 kb on + strandat 1194.755 kb on - strandat 1194.807 kb on - strandat 1194.807 kb on - strandat 1194.847 kb on + strandat 1194.880 kb on + strandat 1194.880 kb on + strandat 1194.881 kb on - strandat 1194.881 kb on - strandat 1194.984 kb on + strandat 1195.010 kb on + strandat 1195.011 kb on - strandat 1195.011 kb on - strandat 1195.011 kb on - strandat 1195.014 kb on + strandat 1195.014 kb on + strandat 1195.014 kb on + strandat 1195.015 kb on - strandat 1195.015 kb on - strandat 1195.017 kb on + strandat 1195.017 kb on + strandat 1195.018 kb on - strandat 1195.018 kb on - strandat 1195.019 kb on + strandat 1195.025 kb on + strandat 1195.025 kb on + strandat 1195.025 kb on + strandat 1195.026 kb on - strandat 1195.026 kb on - strandat 1195.027 kb on + strandat 1195.027 kb on + strandat 1195.028 kb on - strandat 1195.028 kb on - strandat 1195.031 kb on - strandat 1195.110 kb on + strandat 1195.181 kb on + strandat 1195.188 kb on + strandat 1195.219 kb on - strandat 1195.226 kb on + strandat 1195.263 kb on + strandat 1195.278 kb on - strandat 1195.280 kb on + strandat 1195.280 kb on + strandat 1195.281 kb on - strandat 1195.281 kb on - strandat 1195.330 kb on + strandat 1195.330 kb on + strandat 1195.366 kb on + strandat 1195.367 kb on - strandat 1195.596 kb on - strand, within CA264_05150at 1195.679 kb on - strand, within CA264_05150at 1195.679 kb on - strand, within CA264_05150at 1195.740 kb on + strand, within CA264_05150at 1195.742 kb on + strand, within CA264_05150at 1195.742 kb on + strand, within CA264_05150at 1195.981 kb on - strand, within CA264_05150at 1195.981 kb on - strand, within CA264_05150at 1196.023 kb on + strand, within CA264_05150at 1196.023 kb on + strand, within CA264_05150at 1196.023 kb on + strand, within CA264_05150at 1196.023 kb on + strand, within CA264_05150at 1196.024 kb on - strand, within CA264_05150at 1196.288 kb on - strand, within CA264_05150at 1196.288 kb on - strand, within CA264_05150at 1196.293 kb on + strand, within CA264_05150at 1196.316 kb on + strand, within CA264_05150at 1196.426 kb on - strand, within CA264_05150at 1196.459 kb on + strandat 1196.460 kb on - strandat 1196.503 kb on + strandat 1196.527 kb on + strandat 1196.546 kb on - strandat 1196.568 kb on - strandat 1196.577 kb on - strandat 1196.596 kb on + strandat 1196.597 kb on - strandat 1196.606 kb on - strandat 1196.628 kb on + strandat 1196.637 kb on + strandat 1196.701 kb on + strandat 1196.701 kb on + strandat 1196.720 kb on + strandat 1196.721 kb on - strandat 1196.723 kb on + strandat 1196.723 kb on + strandat 1196.723 kb on + strandat 1196.724 kb on - strandat 1196.731 kb on + strandat 1196.821 kb on + strandat 1196.883 kb on - strandat 1196.917 kb on - strandat 1196.921 kb on - strandat 1196.921 kb on - strandat 1196.921 kb on - strandat 1196.921 kb on - strandat 1196.921 kb on - strandat 1196.923 kb on + strandat 1196.928 kb on + strandat 1196.930 kb on + strandat 1196.931 kb on - strandat 1196.931 kb on - strandat 1196.937 kb on + strandat 1196.941 kb on - strandat 1196.968 kb on - strandat 1196.968 kb on - strandat 1197.020 kb on + strandat 1197.020 kb on + strandat 1197.021 kb on - strandat 1197.021 kb on - strandat 1197.021 kb on - strandat 1197.022 kb on + strandat 1197.022 kb on + strandat 1197.022 kb on + strandat 1197.022 kb on + strandat 1197.023 kb on - strandat 1197.023 kb on - strandat 1197.023 kb on - strandat 1197.024 kb on + strandat 1197.024 kb on + strandat 1197.025 kb on - strandat 1197.025 kb on - strandat 1197.025 kb on - strandat 1197.035 kb on + strandat 1197.036 kb on - strandat 1197.037 kb on + strandat 1197.080 kb on + strandat 1197.093 kb on - strandat 1197.093 kb on - strandat 1197.111 kb on + strandat 1197.154 kb on + strand, within CA264_05155at 1197.156 kb on + strand, within CA264_05155at 1197.156 kb on + strand, within CA264_05155at 1197.156 kb on + strand, within CA264_05155at 1197.156 kb on + strand, within CA264_05155at 1197.156 kb on + strand, within CA264_05155at 1197.156 kb on + strand, within CA264_05155at 1197.159 kb on + strand, within CA264_05155at 1197.160 kb on - strand, within CA264_05155at 1197.167 kb on + strand, within CA264_05155at 1197.167 kb on + strand, within CA264_05155at 1197.168 kb on - strand, within CA264_05155at 1197.168 kb on - strand, within CA264_05155at 1197.252 kb on + strand, within CA264_05155at 1197.252 kb on + strand, within CA264_05155at 1197.253 kb on - strand, within CA264_05155at 1197.254 kb on + strand, within CA264_05155at 1197.271 kb on + strand, within CA264_05155at 1197.271 kb on + strand, within CA264_05155at 1197.288 kb on + strand, within CA264_05155at 1197.289 kb on - strand, within CA264_05155at 1197.290 kb on + strand, within CA264_05155at 1197.290 kb on + strand, within CA264_05155at 1197.290 kb on + strand, within CA264_05155at 1197.291 kb on - strand, within CA264_05155at 1197.365 kb on + strand, within CA264_05155at 1197.366 kb on - strand, within CA264_05155at 1197.378 kb on - strand, within CA264_05155at 1197.387 kb on - strand, within CA264_05155at 1197.546 kb on - strand, within CA264_05155at 1197.560 kb on + strand, within CA264_05155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
1,194,259 + CA264_05145 0.83 +0.7
1,194,266 + CA264_05145 0.84 +0.1
1,194,303 - CA264_05145 0.84 +0.3
1,194,303 - CA264_05145 0.84 +0.0
1,194,303 - CA264_05145 0.84 -0.5
1,194,305 - CA264_05145 0.84 -0.4
1,194,308 - CA264_05145 0.85 +0.6
1,194,326 - CA264_05145 0.85 -0.1
1,194,361 - CA264_05145 0.86 +0.2
1,194,382 - CA264_05145 0.86 +1.0
1,194,498 - CA264_05145 0.89 -0.5
1,194,558 - CA264_05145 0.90 +1.0
1,194,558 - CA264_05145 0.90 -0.3
1,194,633 + +2.1
1,194,754 + +0.6
1,194,754 + -0.4
1,194,754 + -1.1
1,194,755 - -0.4
1,194,807 - -0.8
1,194,807 - -0.2
1,194,847 + -0.4
1,194,880 + +0.6
1,194,880 + +0.5
1,194,881 - +1.1
1,194,881 - +0.5
1,194,984 + -0.6
1,195,010 + -0.0
1,195,011 - +0.2
1,195,011 - +1.3
1,195,011 - -0.6
1,195,014 + +0.2
1,195,014 + +0.4
1,195,014 + +0.4
1,195,015 - -0.0
1,195,015 - -0.6
1,195,017 + +0.3
1,195,017 + +0.1
1,195,018 - -0.9
1,195,018 - -0.2
1,195,019 + +0.1
1,195,025 + -0.9
1,195,025 + +0.8
1,195,025 + +0.2
1,195,026 - +0.4
1,195,026 - -0.1
1,195,027 + -0.6
1,195,027 + +0.9
1,195,028 - +0.1
1,195,028 - +0.8
1,195,031 - -0.5
1,195,110 + +0.4
1,195,181 + +1.1
1,195,188 + -1.1
1,195,219 - +0.2
1,195,226 + -1.2
1,195,263 + +0.9
1,195,278 - +0.7
1,195,280 + +0.3
1,195,280 + +0.3
1,195,281 - +1.1
1,195,281 - +0.1
1,195,330 + +1.0
1,195,330 + +0.4
1,195,366 + +1.0
1,195,367 - +0.7
1,195,596 - CA264_05150 0.26 +0.6
1,195,679 - CA264_05150 0.33 +0.3
1,195,679 - CA264_05150 0.33 +2.0
1,195,740 + CA264_05150 0.37 -1.0
1,195,742 + CA264_05150 0.37 +0.9
1,195,742 + CA264_05150 0.37 -0.0
1,195,981 - CA264_05150 0.55 -0.2
1,195,981 - CA264_05150 0.55 +0.1
1,196,023 + CA264_05150 0.58 +0.0
1,196,023 + CA264_05150 0.58 +1.2
1,196,023 + CA264_05150 0.58 -0.4
1,196,023 + CA264_05150 0.58 +1.6
1,196,024 - CA264_05150 0.58 +1.8
1,196,288 - CA264_05150 0.77 +0.8
1,196,288 - CA264_05150 0.77 +0.1
1,196,293 + CA264_05150 0.78 -0.1
1,196,316 + CA264_05150 0.79 -0.4
1,196,426 - CA264_05150 0.88 -0.6
1,196,459 + +1.4
1,196,460 - +0.5
1,196,503 + +0.5
1,196,527 + +0.6
1,196,546 - +1.3
1,196,568 - +0.9
1,196,577 - +0.2
1,196,596 + +0.1
1,196,597 - +0.1
1,196,606 - +0.6
1,196,628 + +0.5
1,196,637 + -0.1
1,196,701 + +0.1
1,196,701 + -0.1
1,196,720 + +0.5
1,196,721 - -0.1
1,196,723 + -0.2
1,196,723 + -0.8
1,196,723 + -0.6
1,196,724 - +0.4
1,196,731 + -0.6
1,196,821 + +1.0
1,196,883 - +0.5
1,196,917 - +0.6
1,196,921 - +0.9
1,196,921 - +0.7
1,196,921 - -0.7
1,196,921 - -0.1
1,196,921 - +0.2
1,196,923 + -1.0
1,196,928 + -0.8
1,196,930 + +0.8
1,196,931 - +0.7
1,196,931 - -1.3
1,196,937 + -0.3
1,196,941 - -1.1
1,196,968 - -0.3
1,196,968 - -0.3
1,197,020 + +0.1
1,197,020 + -1.0
1,197,021 - -1.0
1,197,021 - -0.4
1,197,021 - -0.4
1,197,022 + -0.7
1,197,022 + -0.2
1,197,022 + +0.1
1,197,022 + +0.4
1,197,023 - +0.4
1,197,023 - -0.5
1,197,023 - -0.5
1,197,024 + +0.4
1,197,024 + -0.9
1,197,025 - -0.7
1,197,025 - -0.1
1,197,025 - -0.9
1,197,035 + +0.9
1,197,036 - -0.8
1,197,037 + +0.8
1,197,080 + +1.2
1,197,093 - -0.6
1,197,093 - -1.7
1,197,111 + +1.0
1,197,154 + CA264_05155 0.11 +0.6
1,197,156 + CA264_05155 0.12 +0.3
1,197,156 + CA264_05155 0.12 -0.1
1,197,156 + CA264_05155 0.12 +0.1
1,197,156 + CA264_05155 0.12 -0.1
1,197,156 + CA264_05155 0.12 -1.5
1,197,156 + CA264_05155 0.12 -0.2
1,197,159 + CA264_05155 0.12 -0.0
1,197,160 - CA264_05155 0.12 -0.5
1,197,167 + CA264_05155 0.13 +0.3
1,197,167 + CA264_05155 0.13 -0.8
1,197,168 - CA264_05155 0.13 -0.2
1,197,168 - CA264_05155 0.13 -0.2
1,197,252 + CA264_05155 0.23 -0.4
1,197,252 + CA264_05155 0.23 +0.2
1,197,253 - CA264_05155 0.23 -0.7
1,197,254 + CA264_05155 0.23 -0.5
1,197,271 + CA264_05155 0.25 +0.9
1,197,271 + CA264_05155 0.25 +1.1
1,197,288 + CA264_05155 0.27 -1.0
1,197,289 - CA264_05155 0.27 -0.3
1,197,290 + CA264_05155 0.27 +0.7
1,197,290 + CA264_05155 0.27 +0.0
1,197,290 + CA264_05155 0.27 -0.9
1,197,291 - CA264_05155 0.27 +0.1
1,197,365 + CA264_05155 0.36 +0.5
1,197,366 - CA264_05155 0.36 +0.2
1,197,378 - CA264_05155 0.38 -2.8
1,197,387 - CA264_05155 0.39 +0.6
1,197,546 - CA264_05155 0.57 -0.5
1,197,560 + CA264_05155 0.59 +0.1

Or see this region's nucleotide sequence